Factsheet for Solyc01g096100.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000655	Potato	mitochondrion	86.71	87.45
VIT_15s0046g00260.t01	Wine grape	mitochondrion, nucleus	44.94	44.56
KRH68927	Soybean	nucleus	39.24	43.66
KRG97204	Soybean	nucleus	38.82	43.19
KRH47890	Soybean	cytosol, mitochondrion	37.34	39.86
KRH06447	Soybean	cytosol, mitochondrion	36.08	38.43
Zm00001d005653_P001	Maize	nucleus	33.33	33.91
TraesCS5B01G190300.1	Wheat	cytosol, mitochondrion	33.33	33.91
Zm00001d020233_P001	Maize	mitochondrion	33.33	33.91
HORVU5Hr1G057510.3	Barley	cytosol, mitochondrion	32.7	33.48
Os08t0400300-01	Rice	nucleus	33.97	33.47
TraesCS5D01G198100.1	Wheat	cytosol, mitochondrion	32.91	33.33
TraesCS5A01G194900.2	Wheat	cytosol, mitochondrion	33.33	33.05
KXG35486	Sorghum	cytosol, mitochondrion, nucleus, plasma membrane	32.28	32.62
Zm00001d032283_P004	Maize	mitochondrion	32.91	32.57
EES13800	Sorghum	mitochondrion	32.7	32.36
Os09t0363500-01	Rice	mitochondrion	31.22	31.97
Solyc03g083000.2.1	Tomato	nucleus	21.73	25.37
GSMUA_AchrUn_...	Banana	cytosol	8.44	17.02

Protein Annotations

EnsemblPlants:Solyc01g096100.2.1	EnsemblPlantsGene:Solyc01g096100.2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	ncoils:Coil
PANTHER:PTHR33868	PANTHER:PTHR33868:SF2	SEG:seg	TMHMM:TMhelix	UniParc:UPI00027676C6	UniProt:K4AZZ9
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:87198467..87202872

Molecular Weight (calculated)

52765.4 Da

IEP (calculated)

8.866

GRAVY (calculated)

-0.563

Length

474 amino acids

Sequence
(BLAST)

001: MAVAEARTAW QRAVNRCLVQ EDAKRAPKLA CCSSASPSSK QVDTGPANGA DAQNPSGTCF LPFDRNSSYC DLSPNSRWWL HLQPNYGYQK GLVSELVDSI
101: EAEMENIGPV LDSIPKYNKL CDQNEADSIC VDKFTVGGSL DSQVTRSASY VNSDLGVGSK ELTDVFTEIS KDSPNLEDTG YPNEASKKGL VDLTVGKQID
201: ELSFDTEYPW IGVAKTEPWW RTADTEELAL LVAQRSHDFM ENCDLPQPQN NFVKQDRDVD VDSKIYASSM GPKAGSMRQQ NTNIHKRGNL SFERPSQLDA
301: EGKLQLHTCK SSSLKNSDTA GQKVVPKMST SGNDESKAQL LKALRHSQTR AREAENAAKQ AFAEKEHVVQ LVFRQASQLF AYKQWFQLLQ LENFYFQIKS
401: NKKHPISAML PVMLPRVPKK SKRPQKKSAR VKRAKRGRPR YDLSRYAVVF ALGLGLVGAG LLLGWTVGWM VPTF

Best Arabidopsis Sequence Match ( AT2G46550.1 )
(BLAST)

001: MAAAEARAVW QRTVNRCFVQ EDAKRAPKLT YCQSSSSSTA SSTKQVEVSG SSPRVSVEPR TQSSCAGFMP LPRNPNFPDL LPHNTRLWSH PHHQFQVNKK
101: QPLEDEVNNQ GVSEKKSELG AGEKQGKSFN SESFQEFIEL METRESYGST GYDESSEKKL SELSFDPSSP WNLLSSEKAA PWWRTTDKDE LASLVAQRSL
201: DYVENCDLPT PQKMKRSYYG SPRGFDSDGL RDYSVSGQTI KGTSKGSSCK NRPEASSESD LSKSELLEAL RRSQTRAREA ENMAKEAYAE KEHLVKILLK
301: QAAELFGYKQ WLQLLQLEAL YLQIKNKEID NKNNDDPGVS IPCWSNGKAR KEGRKRRSKR GKPNGAKYAV GLALGMSLVG AGLLLGWTVG WMQMLSF

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPY4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.