CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93252
KRH16004
KRH16007
KRH27951
KRH41049
KRH42233
KRH54078
KRH58350
KRH59722
KRH63883
KRH77516

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46550.1	KRH16004	AT1G54770.1	21798944
AT2G46550.1	KRH16007	AT1G54770.1	21798944
AT2G46550.1	KRH27951	AT1G54770.1	21798944
AT2G46550.1	KRH77516	AT1G54770.1	21798944
AT2G46550.1	KRG93252	AT3G01550.1	21798944
AT2G46550.1	KRH42233	AT3G60360.1	21798944
AT2G46550.1	KRH58350	AT3G60360.1	21798944
AT2G46550.1	KRH41049	AT5G51010.1	21798944
AT2G46550.1	KRH54078	AT5G51010.1	21798944
AT2G46550.1	KRH59722	AT5G51010.1	21798944
AT2G46550.1	KRH63883	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97204	Soybean	nucleus	95.54	95.54
KRH47890	Soybean	cytosol, mitochondrion	61.5	59.01
KRH06447	Soybean	cytosol, mitochondrion	59.15	56.63
VIT_15s0046g00260.t01	Wine grape	mitochondrion, nucleus	53.99	48.12
CDX99425	Canola	nucleus	6.81	46.03
CDY68438	Canola	nucleus	6.81	46.03
CDY61731	Canola	nucleus	31.92	43.45
AT1G01240.3	Thale cress	mitochondrion	32.16	41.39
Bra039276.1-P	Field mustard	nucleus	32.63	41.0
CDY27317	Canola	nucleus	30.75	40.31
PGSC0003DMT400000655	Potato	mitochondrion	44.13	40.0
Solyc01g096100.2.1	Tomato	nucleus	43.66	39.24
CDY15190	Canola	mitochondrion	28.64	39.23
Bra004527.1-P	Field mustard	nucleus, plastid	35.45	38.82
CDX80028	Canola	nucleus, plastid	35.45	38.82
CDX85174	Canola	nucleus	18.54	38.73
Bra032629.1-P	Field mustard	mitochondrion	30.52	38.46
CDY38000	Canola	mitochondrion	30.52	38.24
AT2G46550.1	Thale cress	nucleus, plastid	35.45	38.04
CDY56879	Canola	nucleus	34.74	37.95
CDX90019	Canola	mitochondrion	28.87	36.72
Bra039275.1-P	Field mustard	nucleus	14.79	35.2
Bra033275.1-P	Field mustard	mitochondrion	23.94	33.44
KRH64409	Soybean	nucleus	33.8	31.17
KRH53526	Soybean	nucleus	33.1	30.59
GSMUA_AchrUn_...	Banana	cytosol	9.39	17.02

Protein Annotations

EMBL:ACUP02002128	EnsemblPlants:KRH68927	EnsemblPlantsGene:GLYMA_03G258600	EntrezGene:100784190	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	PANTHER:PTHR33868	PANTHER:PTHR33868:SF2	ProteinID:KRH68927	ProteinID:KRH68927.1	ProteinID:KRH68928.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI000233A7B5	UniProt:I1JS11	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr3:-:45291813..45295310

Molecular Weight (calculated)

47835.2 Da

IEP (calculated)

7.499

GRAVY (calculated)

-0.644

Length

426 amino acids

Sequence
(BLAST)

001: MAGAEARALW QRTANRCFVQ EDAKRAPKLA CCQSSCATSK SVDAGPASTA DESDHTTVNV THFNRKSSIS NLSPDSRWWL HLQPNYGYQK GLTYEQLNAL
101: EDEVETLLAS DLSKNSEEFQ ELMDVMEKHE TMDIDCVGCS GSSKKANDFS LESDYSWIES DKALPWWRTT DRDELASFVS QKSLNHIENC DLPPPQKKHL
201: RGHPCAHVNN DKIKTASYDW EAKSRSFSNL TAHTPGSLDS RLMHKNQGHS ANEGLLYFAS DKCSSQTPKH EDLKKSQQTF DGDPSKAQLM EALCHSQTRA
301: REAEEAAKKA YAEKEHIVTL IFKQASQLFA YKQWLQLLQL ETLCIQIKSK DQPISTLFPV ALPWMSYEGR SSRKRKQKIC NAKQGERKAN SKCDITTYAV
401: AFALGLSLVG AGLLLGWTVG WMLPRS

Best Arabidopsis Sequence Match ( AT2G46550.1 )
(BLAST)

001: MAAAEARAVW QRTVNRCFVQ EDAKRAPKLT YCQSSSSSTA SSTKQVEVSG SSPRVSVEPR TQSSCAGFMP LPRNPNFPDL LPHNTRLWSH PHHQFQVNKK
101: QPLEDEVNNQ GVSEKKSELG AGEKQGKSFN SESFQEFIEL METRESYGST GYDESSEKKL SELSFDPSSP WNLLSSEKAA PWWRTTDKDE LASLVAQRSL
201: DYVENCDLPT PQKMKRSYYG SPRGFDSDGL RDYSVSGQTI KGTSKGSSCK NRPEASSESD LSKSELLEAL RRSQTRAREA ENMAKEAYAE KEHLVKILLK
301: QAAELFGYKQ WLQLLQLEAL YLQIKNKEID NKNNDDPGVS IPCWSNGKAR KEGRKRRSKR GKPNGAKYAV GLALGMSLVG AGLLLGWTVG WMQMLSF

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPY4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.