CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 3
cytosol 2
peroxisome 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93252
KRH16004
KRH16007
KRH27951
KRH41049
KRH42233
KRH54078
KRH58350
KRH59722
KRH63883
KRH77516

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46550.1	KRH16004	AT1G54770.1	21798944
AT2G46550.1	KRH16007	AT1G54770.1	21798944
AT2G46550.1	KRH27951	AT1G54770.1	21798944
AT2G46550.1	KRH77516	AT1G54770.1	21798944
AT2G46550.1	KRG93252	AT3G01550.1	21798944
AT2G46550.1	KRH42233	AT3G60360.1	21798944
AT2G46550.1	KRH58350	AT3G60360.1	21798944
AT2G46550.1	KRH41049	AT5G51010.1	21798944
AT2G46550.1	KRH54078	AT5G51010.1	21798944
AT2G46550.1	KRH59722	AT5G51010.1	21798944
AT2G46550.1	KRH63883	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47890	Soybean	cytosol, mitochondrion	82.25	82.43
KRH68927	Soybean	nucleus	56.63	59.15
KRG97204	Soybean	nucleus	55.06	57.51
VIT_15s0046g00260.t01	Wine grape	mitochondrion, nucleus	46.52	43.31
CDX99425	Canola	nucleus	5.62	39.68
CDY68438	Canola	nucleus	5.62	39.68
CDY61731	Canola	nucleus	27.87	39.62
CDX85174	Canola	nucleus	17.98	39.22
Bra039276.1-P	Field mustard	nucleus	28.54	37.46
PGSC0003DMT400000655	Potato	mitochondrion	39.55	37.45
AT1G01240.3	Thale cress	mitochondrion	27.64	37.16
Bra032629.1-P	Field mustard	mitochondrion	27.87	36.69
CDY27317	Canola	nucleus	26.52	36.31
Solyc01g096100.2.1	Tomato	nucleus	38.43	36.08
AT2G46550.1	Thale cress	nucleus, plastid	31.69	35.52
CDY15190	Canola	mitochondrion	24.72	35.37
CDY38000	Canola	mitochondrion	26.97	35.29
CDX90019	Canola	mitochondrion	26.29	34.93
CDX80028	Canola	nucleus, plastid	30.34	34.7
Bra004527.1-P	Field mustard	nucleus, plastid	30.34	34.7
Bra039275.1-P	Field mustard	nucleus	13.48	33.52
CDY56879	Canola	nucleus	29.21	33.33
Bra033275.1-P	Field mustard	mitochondrion	19.78	28.85
KRH64409	Soybean	nucleus	29.66	28.57
KRH53526	Soybean	nucleus	28.54	27.55
GSMUA_AchrUn_...	Banana	cytosol	8.31	15.74

Protein Annotations

EMBL:ACUP02009840	EnsemblPlants:KRH06447	EnsemblPlantsGene:GLYMA_16G023400	EntrezGene:102663859	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	ncoils:Coil	PANTHER:PTHR33868	PANTHER:PTHR33868:SF2	ProteinID:KRH06447	ProteinID:KRH06447.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI00023D7B75	UniProt:K7MET3	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr16:+:2236221..2238999

Molecular Weight (calculated)

50367.7 Da

IEP (calculated)

7.078

GRAVY (calculated)

-0.474

Length

445 amino acids

Sequence
(BLAST)

001: MATAEVRAAW QRAVNRCFVQ EDAKRAPKLA CCQSSCATSK LFDAGAASAA DEYDHAAASV THFNQKSSFS NVIPDSRWWL LQLQANYEFQ KGLTYEQLNA
101: LEDEVENLNV RNEQKTCKGD ANHFGDENHE YISSMEGMQE VYSKNSKAYR QPMDMIAKHE TMKIDSVGCT MSKHTNDFFF DSDYSWIGVE KALPRWRTTD
201: RDELACFVLR KSLNHVENCD LPPPQKYLRG QPCADICDIK IRTSSFDQEA KSCAFSNLKV QAKRSLESEL MHRMLVPSTN KGHLNFDWDK YSRSYPIIHG
301: GVTEQVFEGN PNKAQLMEAL CHSQTRARKA EEAAKQACAE KEHTIALFFI QASQLFAYKQ WFQLLQLEAL NTQVKNKDQP ISTLFPWIRR KPGETKLKFG
401: YAIQEMLGKP ESEIATYAVA FALGLSLVGA GLLLGWTVGC MLPSP

Best Arabidopsis Sequence Match ( AT2G46550.2 )
(BLAST)

001: METRESYGST GYDESSEKKL SELSFDPSSP WNLLSSEKAA PWWRTTDKDE LASLVAQRSL DYVENCDLPT PQKMKRSYYG SPRGFDSDGL RDYSVSGQTI
101: KGTSKGSSCK NRPEASSESD LSKSELLEAL RRSQTRAREA ENMAKEAYAE KEHLVKILLK QAAELFGYKQ WLQLLQLEAL YLQIKNKEID NKNNDDPGVS
201: IPCWSNGKAR KEGRKRRSKR GKPNGAKYAV GLALGMSLVG AGLLLGWTVG WMQMLSF

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPY4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.