CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71815
CDX74305
CDX84893
CDX90721
CDX91942
CDY00016
CDY05057
CDY41170
CDY45796
CDY56997
CDY58906
CDY59823

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46550.1	CDY00016	AT1G54770.1	21798944
AT2G46550.1	CDY59823	AT1G54770.1	21798944
AT2G46550.1	CDX74305	AT3G01550.1	21798944
AT2G46550.1	CDX91942	AT3G01550.1	21798944
AT2G46550.1	CDX71815	AT3G60360.1	21798944
AT2G46550.1	CDY41170	AT3G60360.1	21798944
AT2G46550.1	CDY56997	AT3G60360.1	21798944
AT2G46550.1	CDY58906	AT3G60360.1	21798944
AT2G46550.1	CDX90721	AT4G09460.1	21798944
AT2G46550.1	CDY05057	AT4G09460.1	21798944
AT2G46550.1	CDX84893	AT5G51010.1	21798944
AT2G46550.1	CDY45796	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80028	Canola	nucleus, plastid	86.92	87.15
CDY61731	Canola	nucleus	49.49	61.66
CDY27317	Canola	nucleus	50.51	60.62
CDX99425	Canola	nucleus	9.49	58.73
CDY68438	Canola	nucleus	9.49	58.73
CDX85174	Canola	nucleus	30.26	57.84
AT2G46550.1	Thale cress	nucleus, plastid	57.44	56.42
CDY15190	Canola	mitochondrion	29.49	36.98
KRH68927	Soybean	nucleus	37.95	34.74
CDX90019	Canola	mitochondrion	29.74	34.63
KRG97204	Soybean	nucleus	37.18	34.04
CDY38000	Canola	mitochondrion	28.46	32.65
VIT_15s0046g00260.t01	Wine grape	mitochondrion, nucleus	38.46	31.38
KRH47890	Soybean	cytosol, mitochondrion	33.59	29.5
KRH06447	Soybean	cytosol, mitochondrion	33.33	29.21
Os09t0363500-01	Rice	mitochondrion	31.03	26.13
KXG35486	Sorghum	cytosol, mitochondrion, nucleus, plasma membrane	30.51	25.37
Zm00001d020233_P001	Maize	mitochondrion	29.74	24.89
Zm00001d032283_P004	Maize	mitochondrion	30.51	24.84
Os08t0400300-01	Rice	nucleus	30.26	24.53
Zm00001d005653_P001	Maize	nucleus	29.23	24.46
HORVU5Hr1G057510.3	Barley	cytosol, mitochondrion	28.21	23.76
TraesCS5D01G198100.1	Wheat	cytosol, mitochondrion	28.46	23.72
EES13800	Sorghum	mitochondrion	28.97	23.59
TraesCS5B01G190300.1	Wheat	cytosol, mitochondrion	27.95	23.39
Solyc03g083000.2.1	Tomato	nucleus	24.1	23.15
TraesCS5A01G194900.2	Wheat	cytosol, mitochondrion	28.21	23.01
PGSC0003DMT400047670	Potato	nucleus	23.08	22.11
GSMUA_AchrUn_...	Banana	cytosol	6.92	11.49

Protein Annotations

EnsemblPlants:CDY56879	EnsemblPlantsGene:GSBRNA2T00020221001	GO:A0A078J1A1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR33868	PANTHER:PTHR33868:SF2	ProteinID:CDY56879	ProteinID:CDY56879.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0004EF1B2D	UniProt:A0A078J1A1	MapMan:35.2	:	:

Description

BnaC04g52160DBnaC04g52160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J1A1]

Coordinates

chrLK033526:-:37288..39165

Molecular Weight (calculated)

43989.6 Da

IEP (calculated)

9.301

GRAVY (calculated)

-0.829

Length

390 amino acids

Sequence
(BLAST)

001: MMAAGEARAV WQRTVNRYFV QEDAKRAPKL TTSCQSSSST VSSKQVEDSG SSRPVVDPHN QSSSCAGFMP RHPNPNFPHL LPHNTSLWGH PHHIQQDHKE
101: QVNTPSEAEV DISEKKPELG AKSFKSESFQ EFIELMETRE SYVSFGKDES SSENKLTNEL PFDPSSPWNP LSSEKAAPWW RTTDKDELAS LVAQRSLDFV
201: ENCDLPTPQK MNRSYYGSPR SFDSDAFRDH SIPNQTTHAP RRGNSFKNRT EEASSESDLS KSKLLEALRR SQTRAREAEN MAKEACAERE HLVKLLLKQA
301: SELFGYKQLL QLLQLESLYH QIKSKKIEDS KEPPPVSIPW SNTKGRKAGR KRRSKRSKPN GFVGLALGMS LVGAGLLLGW TVGWMQMLSF

Best Arabidopsis Sequence Match ( AT2G46550.1 )
(BLAST)

001: MAAAEARAVW QRTVNRCFVQ EDAKRAPKLT YCQSSSSSTA SSTKQVEVSG SSPRVSVEPR TQSSCAGFMP LPRNPNFPDL LPHNTRLWSH PHHQFQVNKK
101: QPLEDEVNNQ GVSEKKSELG AGEKQGKSFN SESFQEFIEL METRESYGST GYDESSEKKL SELSFDPSSP WNLLSSEKAA PWWRTTDKDE LASLVAQRSL
201: DYVENCDLPT PQKMKRSYYG SPRGFDSDGL RDYSVSGQTI KGTSKGSSCK NRPEASSESD LSKSELLEAL RRSQTRAREA ENMAKEAYAE KEHLVKILLK
301: QAAELFGYKQ WLQLLQLEAL YLQIKNKEID NKNNDDPGVS IPCWSNGKAR KEGRKRRSKR GKPNGAKYAV GLALGMSLVG AGLLLGWTVG WMQMLSF

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPY4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.