CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68438	Canola	nucleus	17.65	57.14
CDX99425	Canola	nucleus	17.16	55.56
CDY61731	Canola	nucleus	62.25	40.58
CDY27317	Canola	nucleus	63.73	40.0
CDX80028	Canola	nucleus, plastid	60.78	31.88
CDY56879	Canola	nucleus	57.84	30.26
CDY15190	Canola	mitochondrion	35.78	23.47
CDX90019	Canola	mitochondrion	37.25	22.69
CDY38000	Canola	mitochondrion	33.33	20.0
KRG97204	Soybean	nucleus	39.22	18.78
VIT_15s0046g00260.t01	Wine grape	mitochondrion, nucleus	43.63	18.62
KRH68927	Soybean	nucleus	38.73	18.54
KRH06447	Soybean	cytosol, mitochondrion	39.22	17.98
KRH47890	Soybean	cytosol, mitochondrion	38.73	17.79
Zm00001d020233_P001	Maize	mitochondrion	35.78	15.67
HORVU5Hr1G057510.3	Barley	cytosol, mitochondrion	33.82	14.9
Zm00001d032283_P004	Maize	mitochondrion	34.8	14.82
Zm00001d005653_P001	Maize	nucleus	33.82	14.81
TraesCS5D01G198100.1	Wheat	cytosol, mitochondrion	33.82	14.74
KXG35486	Sorghum	cytosol, mitochondrion, nucleus, plasma membrane	33.82	14.71
TraesCS5B01G190300.1	Wheat	cytosol, mitochondrion	33.33	14.59
EES13800	Sorghum	mitochondrion	33.82	14.4
Os08t0400300-01	Rice	nucleus	33.33	14.14
Os09t0363500-01	Rice	mitochondrion	31.86	14.04
TraesCS5A01G194900.2	Wheat	cytosol, mitochondrion	32.84	14.02
Solyc03g083000.2.1	Tomato	nucleus	21.57	10.84
PGSC0003DMT400047670	Potato	nucleus	21.57	10.81
GSMUA_AchrUn_...	Banana	cytosol	10.29	8.94

Protein Annotations

EnsemblPlants:CDX85174	EnsemblPlantsGene:GSBRNA2T00142776001	ncoils:Coil	PANTHER:PTHR33868	PANTHER:PTHR33868:SF2	ProteinID:CDX85174
ProteinID:CDX85174.1	SEG:seg	UniParc:UPI0004EDD3E6	MapMan:35.2	:	:

Description

BnaC07g07320D

Coordinates

chrLK031840:+:1774350..1775380

Molecular Weight (calculated)

23181.8 Da

IEP (calculated)

8.097

GRAVY (calculated)

-1.101

Length

204 amino acids

Sequence
(BLAST)

001: MMAAGEARAV WQRTVNRYLV QEDAKRAPKF TSSHSSSTKQ PNQKAQVKTP MEAGVDKHEL GAKSFKPESF QELIETRESY GSFGKDESSE KHFDPTSPWN
101: PLSSEKAGPW WRTTDKDELA SLVAQRCLHF VENYDLPTPQ KMKRSYYHGS SPHEHWPSSC KKRTEEASSE SDLSKSELLE ALRRSQTRAR EAENMAKEAC
201: AEKA

Best Arabidopsis Sequence Match ( AT2G46550.1 )
(BLAST)

001: MAAAEARAVW QRTVNRCFVQ EDAKRAPKLT YCQSSSSSTA SSTKQVEVSG SSPRVSVEPR TQSSCAGFMP LPRNPNFPDL LPHNTRLWSH PHHQFQVNKK
101: QPLEDEVNNQ GVSEKKSELG AGEKQGKSFN SESFQEFIEL METRESYGST GYDESSEKKL SELSFDPSSP WNLLSSEKAA PWWRTTDKDE LASLVAQRSL
201: DYVENCDLPT PQKMKRSYYG SPRGFDSDGL RDYSVSGQTI KGTSKGSSCK NRPEASSESD LSKSELLEAL RRSQTRAREA ENMAKEAYAE KEHLVKILLK
301: QAAELFGYKQ WLQLLQLEAL YLQIKNKEID NKNNDDPGVS IPCWSNGKAR KEGRKRRSKR GKPNGAKYAV GLALGMSLVG AGLLLGWTVG WMQMLSF

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPY4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.