CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93252
KRH16004
KRH16007
KRH27951
KRH41049
KRH42233
KRH54078
KRH58350
KRH59722
KRH63883
KRH77516

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46550.1	KRH16004	AT1G54770.1	21798944
AT2G46550.1	KRH16007	AT1G54770.1	21798944
AT2G46550.1	KRH27951	AT1G54770.1	21798944
AT2G46550.1	KRH77516	AT1G54770.1	21798944
AT2G46550.1	KRG93252	AT3G01550.1	21798944
AT2G46550.1	KRH42233	AT3G60360.1	21798944
AT2G46550.1	KRH58350	AT3G60360.1	21798944
AT2G46550.1	KRH41049	AT5G51010.1	21798944
AT2G46550.1	KRH54078	AT5G51010.1	21798944
AT2G46550.1	KRH59722	AT5G51010.1	21798944
AT2G46550.1	KRH63883	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06447	Soybean	cytosol, mitochondrion	82.43	82.25
KRH68927	Soybean	nucleus	59.01	61.5
KRG97204	Soybean	nucleus	58.11	60.56
VIT_15s0046g00260.t01	Wine grape	mitochondrion, nucleus	48.65	45.19
CDX99425	Canola	nucleus	5.86	41.27
CDY68438	Canola	nucleus	5.86	41.27
CDY61731	Canola	nucleus	28.15	39.94
CDX85174	Canola	nucleus	17.79	38.73
PGSC0003DMT400000655	Potato	mitochondrion	40.54	38.3
Bra039276.1-P	Field mustard	nucleus	28.83	37.76
Bra032629.1-P	Field mustard	mitochondrion	28.6	37.57
Solyc01g096100.2.1	Tomato	nucleus	39.86	37.34
CDY27317	Canola	nucleus	27.25	37.23
AT1G01240.3	Thale cress	mitochondrion	27.7	37.16
CDY15190	Canola	mitochondrion	25.68	36.66
CDY38000	Canola	mitochondrion	27.7	36.18
CDX90019	Canola	mitochondrion	27.03	35.82
AT2G46550.1	Thale cress	nucleus, plastid	31.98	35.77
CDX80028	Canola	nucleus, plastid	30.41	34.7
Bra004527.1-P	Field mustard	nucleus, plastid	30.41	34.7
CDY56879	Canola	nucleus	29.5	33.59
Bra039275.1-P	Field mustard	nucleus	13.51	33.52
Bra033275.1-P	Field mustard	mitochondrion	19.82	28.85
KRH64409	Soybean	nucleus	29.95	28.79
KRH53526	Soybean	nucleus	28.83	27.77
GSMUA_AchrUn_...	Banana	cytosol	8.33	15.74

Protein Annotations

EMBL:ACUP02004179	EnsemblPlants:KRH47890	EnsemblPlantsGene:GLYMA_07G054600	EntrezGene:100805482	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	ncoils:Coil	PANTHER:PTHR33868	PANTHER:PTHR33868:SF2	ProteinID:KRH47890	ProteinID:KRH47890.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI00023C6BE8	UniProt:I1KHU2	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr7:+:4790133..4792975

Molecular Weight (calculated)

49609.4 Da

IEP (calculated)

6.193

GRAVY (calculated)

-0.498

Length

444 amino acids

Sequence
(BLAST)

001: MATAEVRASW QRAVNRCFVP EDAKRAPKLA CCQSSCATSK LFDAGAASAS DEFDHAAVDV THFNQNSSFS NVIPDSRWWL LQLQPNYEVQ KGLTYEQLNA
101: LEDEVENLNA SNENKTCKGD ADHFGDENHE YISSMEGMQE ANSKKSQGCP QLMDMIAKHE KVETDSVGCT MSKQTNDFSF DSDYSWIGVE KAQPWWRTTD
201: RDELACFVSR KSLNHIENCD LPPPQKYLRV QPSADISNVK IKTSSFDREA KSSAFSNFNV QAKRSLESEL MHRKLVPSTN KGHLNFDCDK YSSYPTIHGG
301: VTEQVFEGNP SKAQLMEALC HFQTRARKAE EAAKQACAEK ENTIALFFIQ ASQLFAYKQW FQLLQLEALN SQVKNKDQSI STLFPWIGTE PGERMLKFGN
401: AKQKMLGKPE SGIATYAVAL ALGLSLVGAG LLLGWTVGCM LPRL

Best Arabidopsis Sequence Match ( AT2G46550.3 )
(BLAST)

001: MPLPRNPNFP DLLPHNTRLW SHPHHQFQVN KKQPLEDEVN NQGVSEKKSE LGAGEKQGKS FNSESFQEFI ELMETRESYG STGYDESSEK KLSELSFDPS
101: SPWNLLSSEK AAPWWRTTDK DELASLVAQR SLDYVENCDL PTPQKMKRSY YGSPRGFDSD GLRDYSVSGQ TIKGTSKGSS CKNRPEASSE SDLSKSELLE
201: ALRRSQTRAR EAENMAKEAY AEKEHLVKIL LKQAAELFGY KQWLQLLQLE ALYLQIKNKE IDNKNNDDPG VSIPCWSNGK ARKEGRKRRS KRGKPNGAKY
301: AVGLALGMSL VGAGLLLGWT VGWMQMLSF

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPY4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.