CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90019	Canola	mitochondrion	81.35	75.52
AT1G01240.3	Thale cress	mitochondrion	75.88	71.3
CDY38000	Canola	mitochondrion	63.34	57.94
Bra033275.1-P	Field mustard	mitochondrion	55.31	56.39
CDX99425	Canola	nucleus	9.0	44.44
CDY68438	Canola	nucleus	9.0	44.44
CDX85174	Canola	nucleus	23.47	35.78
CDY27317	Canola	nucleus	36.98	35.38
CDY61731	Canola	nucleus	34.73	34.5
CDX80028	Canola	nucleus, plastid	36.98	29.56
CDY56879	Canola	nucleus	36.98	29.49
KRH68927	Soybean	nucleus	39.23	28.64
KRG97204	Soybean	nucleus	38.59	28.17
VIT_15s0046g00260.t01	Wine grape	mitochondrion, nucleus	41.16	26.78
KRH47890	Soybean	cytosol, mitochondrion	36.66	25.68
KRH06447	Soybean	cytosol, mitochondrion	35.37	24.72
Zm00001d020233_P001	Maize	mitochondrion	34.41	22.96
KXG35486	Sorghum	cytosol, mitochondrion, nucleus, plasma membrane	34.41	22.81
Zm00001d005653_P001	Maize	nucleus	34.08	22.75
PGSC0003DMT400047670	Potato	nucleus	29.26	22.36
Os08t0400300-01	Rice	nucleus	34.41	22.25
Zm00001d032283_P004	Maize	mitochondrion	34.08	22.13
HORVU5Hr1G057510.3	Barley	cytosol, mitochondrion	32.8	22.03
Solyc03g083000.2.1	Tomato	nucleus	28.62	21.92
TraesCS5B01G190300.1	Wheat	cytosol, mitochondrion	32.48	21.67
TraesCS5D01G198100.1	Wheat	cytosol, mitochondrion	32.48	21.58
Os09t0363500-01	Rice	mitochondrion	31.83	21.38
TraesCS5A01G194900.2	Wheat	cytosol, mitochondrion	32.8	21.34
EES13800	Sorghum	mitochondrion	32.8	21.29
GSMUA_AchrUn_...	Banana	cytosol	7.72	10.21

Protein Annotations

EnsemblPlants:CDY15190	EnsemblPlantsGene:GSBRNA2T00085376001	GO:A0A078FL69	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR33868	PANTHER:PTHR33868:SF2	ProteinID:CDY15190	ProteinID:CDY15190.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0004EE31AD	UniProt:A0A078FL69	MapMan:35.2	:	:

Description

BnaC05g00690DBnaC05g00690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FL69]

Coordinates

chrLK032052:-:373462..374468

Molecular Weight (calculated)

35521.5 Da

IEP (calculated)

9.023

GRAVY (calculated)

-0.518

Length

311 amino acids

Sequence
(BLAST)

001: MGAAEARALW QRTSAGRCFV VHEDSKMAPS FGDFSCDTKW WLKGSSGFDE EIANTFFEDA TKCKKLHQFV DLIGIREQEV ADYSFMSKKD IAATPWWRST
101: TDKDELALLV ATRSLDYNIQ NCDLPPPQKL HKRIDCTSGE KWFKTLVKSP CKQVSWGEPF ERSLSSSGST ESKNTSPKSS LMSDDLSKAQ ILEALRHSQT
201: RAREAEKTAR EACAEKELVM TIFLRQASHL LAYKEWLKLL EMEANYRQMK KEEEEELGQI KGVNLKKRKQ RGKKNKMVEI GRRYMVAFAL GFSLIGAGLF
301: LGWTVGWLFP F

Best Arabidopsis Sequence Match ( AT1G01240.2 )
(BLAST)

001: MGAAEARALW QRTASRCFVV HEDAKMAPRL ACCQHQQSSS GNTEKNSFSS GSFGDSSDFS CDTKWWLKGS TGFDEEVTNS FLEDTKCKKL HEFVDLIGIR
101: EEEDYSFISK KADATTPWWR STTDKDELAL MVATKSVDHN IQNCDLPPPQ KLHKSIHSSS GEKGFKTAVK SPWKQGVWKD RFERSLSYNG STESKNTSPM
201: SSPRSDDLSK GQLLEALRHS QTRAREAERA AREACAEKDR VITILLKQAS QMLAYKQWLK LLEMEALYLQ MKKEEEQEEQ VKGMNLKKRK QRGEKKKKGE
301: TGRYMMAFAL GFSLIGAGLL LGWTVGWLLP F

Arabidopsis Description

At1g01240/F6F3_11 [Source:UniProtKB/TrEMBL;Acc:Q9LNJ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.