Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G190300.1 | Wheat | cytosol, mitochondrion | 94.02 | 94.42 |
| TraesCS5A01G194900.2 | Wheat | cytosol, mitochondrion | 95.73 | 93.72 |
| HORVU5Hr1G057510.3 | Barley | cytosol, mitochondrion | 89.53 | 90.5 |
| Os09t0363500-01 | Rice | mitochondrion | 67.73 | 68.47 |
| KXG35486 | Sorghum | cytosol, mitochondrion, nucleus, plasma membrane | 61.54 | 61.41 |
| Zm00001d020233_P001 | Maize | mitochondrion | 60.47 | 60.73 |
| Zm00001d005653_P001 | Maize | nucleus | 57.27 | 57.51 |
| GSMUA_Achr7P24360_001 | Banana | nucleus | 17.95 | 51.22 |
| CDY68438 | Canola | nucleus | 5.56 | 41.27 |
| CDX99425 | Canola | nucleus | 5.56 | 41.27 |
| GSMUA_Achr3P32190_001 | Banana | mitochondrion, nucleus | 34.62 | 40.81 |
| GSMUA_Achr4P09100_001 | Banana | cytosol | 36.75 | 35.91 |
| CDY61731 | Canola | nucleus | 22.65 | 33.87 |
| CDX85174 | Canola | nucleus | 14.74 | 33.82 |
| AT1G01240.3 | Thale cress | mitochondrion | 23.72 | 33.53 |
| Bra039276.1-P | Field mustard | nucleus | 23.93 | 33.04 |
| CDY27317 | Canola | nucleus | 22.86 | 32.92 |
| Solyc01g096100.2.1 | Tomato | nucleus | 33.33 | 32.91 |
| PGSC0003DMT400000655 | Potato | mitochondrion | 32.69 | 32.55 |
| CDY15190 | Canola | mitochondrion | 21.58 | 32.48 |
| CDY38000 | Canola | mitochondrion | 23.5 | 32.35 |
| Bra032629.1-P | Field mustard | mitochondrion | 22.86 | 31.66 |
| CDX90019 | Canola | mitochondrion | 22.65 | 31.64 |
| AT2G46550.1 | Thale cress | nucleus, plastid | 26.5 | 31.23 |
| Bra033275.1-P | Field mustard | mitochondrion | 19.44 | 29.84 |
| VIT_16s0098g01690.t01 | Wine grape | nucleus, plastid | 31.84 | 29.33 |
| CDX80028 | Canola | nucleus, plastid | 24.15 | 29.05 |
| Bra004527.1-P | Field mustard | nucleus, plastid | 24.15 | 29.05 |
| KRH64409 | Soybean | nucleus | 28.63 | 29.0 |
| KRH53526 | Soybean | nucleus | 28.21 | 28.63 |
| Bra039275.1-P | Field mustard | nucleus | 10.9 | 28.49 |
| CDY56879 | Canola | nucleus | 23.72 | 28.46 |
| PGSC0003DMT400047670 | Potato | nucleus | 22.44 | 25.8 |
| Solyc03g083000.2.1 | Tomato | nucleus | 22.01 | 25.37 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G198100.1 | EnsemblPlantsGene:TraesCS5D01G198100 | PANTHER:PTHR33868 | PANTHER:PTHR33868:SF1 | SEG:seg | TMHMM:TMhelix |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5D:+:301110494..301112513
Molecular Weight (calculated)
52500.1 Da
IEP (calculated)
7.957
GRAVY (calculated)
-0.791
Length
468 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAEARAAW QRAANRCLFQ EDAKRAPKLA CCPPSMQQHE ANSGNPTSPR DCHIPNFMHL NWNPMNSNQP IDAWFLQLQP NFGCHKVLSG DHLNYMGGEA
101: NVKKVDSFSP VSTLDDINTK KSECPSEPPW MVSTAFMKQT SEAPCEGCPQ TSLKCRGNSN NFLHEDKEVM DFNTFDPLFP KKPKKACYEM DPPWEQDRKS
201: QPWWQVADEE GLASLVAERA MQHIENNDLP KPTQIVRIHG AKLNGHESKD GCGKSSSSSG KESQPQLHDT MMCSYSLSST NEMNSSDGGG WQQSHKNDAH
301: GGTQDSYSSG DHTPGSKPTY QNQKDAERAQ LLDALRHSQT RAREAEVAAK NAHDEKDHVV KLLFRQASHL FACKQWLKML QLENICLQLR LKEHQIAAMF
401: PELPWTVMKE EKVDPEGERK GRAKKKGRRQ NKEGGFCKAI MFAVGVGIVG AGLLLGWTFG WLLPRRMK
101: NVKKVDSFSP VSTLDDINTK KSECPSEPPW MVSTAFMKQT SEAPCEGCPQ TSLKCRGNSN NFLHEDKEVM DFNTFDPLFP KKPKKACYEM DPPWEQDRKS
201: QPWWQVADEE GLASLVAERA MQHIENNDLP KPTQIVRIHG AKLNGHESKD GCGKSSSSSG KESQPQLHDT MMCSYSLSST NEMNSSDGGG WQQSHKNDAH
301: GGTQDSYSSG DHTPGSKPTY QNQKDAERAQ LLDALRHSQT RAREAEVAAK NAHDEKDHVV KLLFRQASHL FACKQWLKML QLENICLQLR LKEHQIAAMF
401: PELPWTVMKE EKVDPEGERK GRAKKKGRRQ NKEGGFCKAI MFAVGVGIVG AGLLLGWTFG WLLPRRMK
001: MAAAEARAVW QRTVNRCFVQ EDAKRAPKLT YCQSSSSSTA SSTKQVEVSG SSPRVSVEPR TQSSCAGFMP LPRNPNFPDL LPHNTRLWSH PHHQFQVNKK
101: QPLEDEVNNQ GVSEKKSELG AGEKQGKSFN SESFQEFIEL METRESYGST GYDESSEKKL SELSFDPSSP WNLLSSEKAA PWWRTTDKDE LASLVAQRSL
201: DYVENCDLPT PQKMKRSYYG SPRGFDSDGL RDYSVSGQTI KGTSKGSSCK NRPEASSESD LSKSELLEAL RRSQTRAREA ENMAKEAYAE KEHLVKILLK
301: QAAELFGYKQ WLQLLQLEAL YLQIKNKEID NKNNDDPGVS IPCWSNGKAR KEGRKRRSKR GKPNGAKYAV GLALGMSLVG AGLLLGWTVG WMQMLSF
101: QPLEDEVNNQ GVSEKKSELG AGEKQGKSFN SESFQEFIEL METRESYGST GYDESSEKKL SELSFDPSSP WNLLSSEKAA PWWRTTDKDE LASLVAQRSL
201: DYVENCDLPT PQKMKRSYYG SPRGFDSDGL RDYSVSGQTI KGTSKGSSCK NRPEASSESD LSKSELLEAL RRSQTRAREA ENMAKEAYAE KEHLVKILLK
301: QAAELFGYKQ WLQLLQLEAL YLQIKNKEID NKNNDDPGVS IPCWSNGKAR KEGRKRRSKR GKPNGAKYAV GLALGMSLVG AGLLLGWTVG WMQMLSF
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPY4]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.