Factsheet for VIT_16s0098g01690.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P24360_001	Banana	nucleus	15.94	49.39
VIT_15s0046g00260.t01	Wine grape	mitochondrion, nucleus	38.19	40.59
KRH64409	Soybean	nucleus	36.22	39.83
KRH53526	Soybean	nucleus	36.02	39.7
GSMUA_Achr3P32190_001	Banana	mitochondrion, nucleus	29.13	37.28
Os08t0400300-01	Rice	nucleus	31.1	32.85
GSMUA_Achr4P09100_001	Banana	cytosol	30.51	32.36
TraesCS5B01G190300.1	Wheat	cytosol, mitochondrion	29.53	32.19
TraesCS5D01G198100.1	Wheat	cytosol, mitochondrion	29.33	31.84
HORVU5Hr1G057510.3	Barley	cytosol, mitochondrion	28.94	31.75
Os09t0363500-01	Rice	mitochondrion	28.94	31.75
KXG35486	Sorghum	cytosol, mitochondrion, nucleus, plasma membrane	29.13	31.56
TraesCS5A01G194900.2	Wheat	cytosol, mitochondrion	29.33	31.17
Zm00001d020233_P001	Maize	mitochondrion	28.54	31.12
Zm00001d032283_P004	Maize	mitochondrion	29.33	31.11
Zm00001d005653_P001	Maize	nucleus	27.95	30.47
EES13800	Sorghum	mitochondrion	28.54	30.27

Protein Annotations

ArrayExpress:VIT_16s0098g01690	EMBL:FN595247	EnsemblPlants:VIT_16s0098g01690.t01	EnsemblPlantsGene:VIT_16s0098g01690	EntrezGene:100243561	EntrezGene:LOC100243561
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR33868	PANTHER:PTHR33868:SF8	ProteinID:CCB48054
ProteinID:CCB48054.1	RefSeq:XP_002272343	RefSeq:XP_002272343.1	SEG:seg	TMHMM:TMhelix	unigene:Vvi.22704
UniParc:UPI000210A0B0	UniProt:F6H799	wikigene:100243561	wikigene:LOC100243561	MapMan:35.2	:

Description

No Description!

Coordinates

chr16:+:21798690..21804471

Molecular Weight (calculated)

56777.7 Da

IEP (calculated)

6.273

GRAVY (calculated)

-0.791

Length

508 amino acids

Sequence
(BLAST)

001: MAAAESRAGW KRNTNRCFIH ENASRAPNSS SFPSSSSSSK RQSDGRPGDA AHRSDHPSPD CMHQNCNPLE DPAPDSKWWL YPQPNFGHQK GFEHEQLNTL
101: ENEFDILSYE FINQTAIEGL GAQTETKKNA DFFLDRSRKA SAASMKEDQF ARMSKPKIGL HSNPQDIGKD KDIEELWYTD EDLDPVNSLV SEQSKKLSSD
201: LESHWMGAEK TEPWWRKADK DTLASMVAQK SVEHIENCDL PKPQIKHFRR GLSASLEWSD QDWMVAPSLD QMAELGFSNL TDCTWKSHTS ASIDEKQSSL
301: GAIEYSPNRS DTLFRNNSHS ITGTDQEETC HIPEDASKAQ LVEALCHSQT RAREAEKAAQ QAYEEKEHII KLFFKQASQL FAYKQWLQLL QLETLCLEPK
401: NKDQPISSHA PTVLPWIPYI AQKPRKGQHN GSKKGSTTNG NGRSRYTTVA FALGLGLAGA GLLLGWTLGW LFPALQTASS SRSASSSLQN SDSDDSKFTT
501: PSAIIARE

Best Arabidopsis Sequence Match ( AT2G46550.2 )
(BLAST)

001: METRESYGST GYDESSEKKL SELSFDPSSP WNLLSSEKAA PWWRTTDKDE LASLVAQRSL DYVENCDLPT PQKMKRSYYG SPRGFDSDGL RDYSVSGQTI
101: KGTSKGSSCK NRPEASSESD LSKSELLEAL RRSQTRAREA ENMAKEAYAE KEHLVKILLK QAAELFGYKQ WLQLLQLEAL YLQIKNKEID NKNNDDPGVS
201: IPCWSNGKAR KEGRKRRSKR GKPNGAKYAV GLALGMSLVG AGLLLGWTVG WMQMLSF

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPY4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.