Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG35486 | Sorghum | cytosol, mitochondrion, nucleus, plasma membrane | 75.11 | 74.63 |
| Zm00001d020233_P001 | Maize | mitochondrion | 73.18 | 73.18 |
| Os09t0363500-01 | Rice | mitochondrion | 61.37 | 61.77 |
| HORVU5Hr1G057510.3 | Barley | cytosol, mitochondrion | 57.73 | 58.1 |
| TraesCS5D01G198100.1 | Wheat | cytosol, mitochondrion | 57.51 | 57.27 |
| TraesCS5B01G190300.1 | Wheat | cytosol, mitochondrion | 57.08 | 57.08 |
| TraesCS5A01G194900.2 | Wheat | cytosol, mitochondrion | 57.94 | 56.49 |
| GSMUA_Achr7P24360_001 | Banana | nucleus | 19.1 | 54.27 |
| Zm00001d032283_P004 | Maize | mitochondrion | 45.71 | 44.47 |
| GSMUA_Achr3P32190_001 | Banana | mitochondrion, nucleus | 34.12 | 40.05 |
| CDX99425 | Canola | nucleus | 5.15 | 38.1 |
| CDY68438 | Canola | nucleus | 5.15 | 38.1 |
| AT1G01240.3 | Thale cress | mitochondrion | 25.97 | 36.56 |
| GSMUA_Achr4P09100_001 | Banana | cytosol | 35.19 | 34.24 |
| CDY15190 | Canola | mitochondrion | 22.75 | 34.08 |
| Bra032629.1-P | Field mustard | mitochondrion | 24.68 | 34.02 |
| CDX85174 | Canola | nucleus | 14.81 | 33.82 |
| CDY38000 | Canola | mitochondrion | 24.46 | 33.53 |
| Solyc01g096100.2.1 | Tomato | nucleus | 33.91 | 33.33 |
| PGSC0003DMT400000655 | Potato | mitochondrion | 33.26 | 32.98 |
| CDY61731 | Canola | nucleus | 22.1 | 32.91 |
| CDY27317 | Canola | nucleus | 22.75 | 32.62 |
| CDX90019 | Canola | mitochondrion | 23.18 | 32.24 |
| Bra039276.1-P | Field mustard | nucleus | 23.18 | 31.86 |
| Bra033275.1-P | Field mustard | mitochondrion | 20.6 | 31.48 |
| AT2G46550.1 | Thale cress | nucleus, plastid | 25.97 | 30.48 |
| KRH53526 | Soybean | nucleus | 29.4 | 29.72 |
| CDX80028 | Canola | nucleus, plastid | 24.68 | 29.56 |
| Bra004527.1-P | Field mustard | nucleus, plastid | 24.68 | 29.56 |
| CDY56879 | Canola | nucleus | 24.46 | 29.23 |
| KRH64409 | Soybean | nucleus | 28.54 | 28.79 |
| Bra039275.1-P | Field mustard | nucleus | 10.94 | 28.49 |
| VIT_16s0098g01690.t01 | Wine grape | nucleus, plastid | 30.47 | 27.95 |
| Solyc03g083000.2.1 | Tomato | nucleus | 21.89 | 25.12 |
| PGSC0003DMT400047670 | Potato | nucleus | 21.46 | 24.57 |
Protein Annotations
| EnsemblPlants:Zm00001d005653_P001 | EnsemblPlants:Zm00001d005653_T001 | EnsemblPlantsGene:Zm00001d005653 | EntrezGene:100278420 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | PANTHER:PTHR33868 | PANTHER:PTHR33868:SF1 | ProteinID:ONM21618.1 | ProteinID:ONM21619.1 | ProteinID:ONM21620.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI000221FB34 | UniProt:A0A096SUG7 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr2:+:182137851..182141333
Molecular Weight (calculated)
51928.4 Da
IEP (calculated)
6.866
GRAVY (calculated)
-0.603
Length
466 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAEARAAW QRAANRCMVQ EDAKRAPHLV CCSPPLQPHD TSDGNPLSPQ DLHVPTFVPI NWNLMNSSLP METQWWLQLQ PNFGCQAALA RERLNYVGAE
101: AAEKKTEGLA PVPKLEDVQA NKAADPFEPP WTISAAVMKQ TSGTGLEELK NLACYTPVSL DCKGSANRCV SEDNKFTDFK AFDPLFPKPQ KEYCEMHAPW
201: KETRKSQPWW QLADADGLAS LVAERAMENI VDNDLPRPTQ TVRVHGGEVK VPENKDDYGL SALCADKELD PAHDTMECSY SVSSTTNNDT NSSDGGHWQQ
301: HQRNKEPGEA HDSYSSTANT PGGKPAYQNA SERAKLLDAL RHSQTRAREA EIAAKKAYDE KDHVIKLLFR QASHLFACKQ WLKMLQLENI CLQLRFREHQ
401: IATMFPELPW MVTKEKVAPS QEHSDRKKGR RLNRKGGLRD AVAFAVGVGI VGAGLLLGWT LGWLLP
101: AAEKKTEGLA PVPKLEDVQA NKAADPFEPP WTISAAVMKQ TSGTGLEELK NLACYTPVSL DCKGSANRCV SEDNKFTDFK AFDPLFPKPQ KEYCEMHAPW
201: KETRKSQPWW QLADADGLAS LVAERAMENI VDNDLPRPTQ TVRVHGGEVK VPENKDDYGL SALCADKELD PAHDTMECSY SVSSTTNNDT NSSDGGHWQQ
301: HQRNKEPGEA HDSYSSTANT PGGKPAYQNA SERAKLLDAL RHSQTRAREA EIAAKKAYDE KDHVIKLLFR QASHLFACKQ WLKMLQLENI CLQLRFREHQ
401: IATMFPELPW MVTKEKVAPS QEHSDRKKGR RLNRKGGLRD AVAFAVGVGI VGAGLLLGWT LGWLLP
001: METRESYGST GYDESSEKKL SELSFDPSSP WNLLSSEKAA PWWRTTDKDE LASLVAQRSL DYVENCDLPT PQKMKRSYYG SPRGFDSDGL RDYSVSGQTI
101: KGTSKGSSCK NRPEASSESD LSKSELLEAL RRSQTRAREA ENMAKEAYAE KEHLVKILLK QAAELFGYKQ WLQLLQLEAL YLQIKNKEID NKNNDDPGVS
201: IPCWSNGKAR KEGRKRRSKR GKPNGAKYAV GLALGMSLVG AGLLLGWTVG WMQMLSF
101: KGTSKGSSCK NRPEASSESD LSKSELLEAL RRSQTRAREA ENMAKEAYAE KEHLVKILLK QAAELFGYKQ WLQLLQLEAL YLQIKNKEID NKNNDDPGVS
201: IPCWSNGKAR KEGRKRRSKR GKPNGAKYAV GLALGMSLVG AGLLLGWTVG WMQMLSF
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPY4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.