Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
20089766
plastid: 22065420 plastid: 23198870 |
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES09846 | Sorghum | plastid | 83.67 | 81.46 |
| Os11t0528500-01 | Rice | plastid | 71.43 | 69.54 |
| TraesCS4B01G100700.1 | Wheat | plastid | 68.71 | 66.01 |
| TraesCS4D01G097300.1 | Wheat | plastid | 68.03 | 65.36 |
| TraesCS4A01G215500.1 | Wheat | plastid | 65.31 | 61.94 |
| KRH59722 | Soybean | nucleus | 63.27 | 60.39 |
| VIT_17s0000g00110.t01 | Wine grape | plastid | 63.95 | 58.02 |
| GSMUA_Achr10P... | Banana | plastid | 66.67 | 57.99 |
| KRH41049 | Soybean | nucleus, plastid | 61.9 | 57.96 |
| Solyc03g118130.2.1 | Tomato | plastid | 61.9 | 57.59 |
| PGSC0003DMT400036930 | Potato | plastid | 61.22 | 56.25 |
| AT5G51010.1 | Thale cress | plastid | 58.5 | 55.84 |
| Bra022748.1-P | Field mustard | plastid | 57.82 | 54.14 |
| CDX84893 | Canola | plastid | 57.82 | 54.14 |
| KRH63883 | Soybean | plastid | 60.54 | 53.94 |
| CDY45796 | Canola | plastid | 56.46 | 51.23 |
| KRH54078 | Soybean | plastid | 48.3 | 49.31 |
| HORVU4Hr1G043650.2 | Barley | plastid | 63.95 | 37.3 |
| GSMUA_Achr6P16380_001 | Banana | vacuole | 34.01 | 28.41 |
Protein Annotations
| EntrezGene:100191834 | Gene3D:2.20.28.10 | MapMan:35.2 | UniProt:B4FAC5 | EMBL:BT034063 | EMBL:BT042822 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005506 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:IPR024934 | ProteinID:ONM26703.1 | PFscan:PS50903 | PANTHER:PTHR45299 | InterPro:Rubredoxin-like_dom | InterPro:Rubredoxin_dom |
| SUPFAM:SSF57802 | TMHMM:TMhelix | UniParc:UPI00017B629A | EnsemblPlantsGene:Zm00001d007394 | EnsemblPlants:Zm00001d007394_P001 | EnsemblPlants:Zm00001d007394_T001 |
| SEG:seg | : | : | : | : | : |
Description
Rubredoxin-like superfamily protein
Coordinates
chr2:-:230641539..230643188
Molecular Weight (calculated)
16353.9 Da
IEP (calculated)
10.632
GRAVY (calculated)
-0.298
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MALQAPSLMR APAAQRSAPP RPSFSAPWSL RLPAPARRRV ATAARITMRV ASKQAYICRD CGYIYNDRTP FDKLADNYFC PVCGAPKRRF RPYEPAVSKN
101: ANATDARKAR KEELKKEESM GKALPIAIVV GIIALAGLYF YLNNVYS
101: ANATDARKAR KEELKKEESM GKALPIAIVV GIIALAGLYF YLNNVYS
001: MAMQLPPTTL YAGRSSVVLP PTTPTLQRSS FLPYYSMRLL GNKKSLSKSS APRFSMRVSS KQAYICRDCG YIYNDRTPFD KLPDNYFCPV CAAPKRRFRA
101: YMPDVSKNVN DKDVRKARKA ELQRDEAVGK ALPIGIAVGV LALAALYFYV NSTS
101: YMPDVSKNVN DKDVRKARKA ELQRDEAVGK ALPIGIAVGV LALAALYFYV NSTS
Arabidopsis Description
Rubredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FI47]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.