Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G100700.1 | Wheat | plastid | 98.04 | 98.04 |
| TraesCS4A01G215500.1 | Wheat | plastid | 92.81 | 91.61 |
| Os11t0528500-01 | Rice | plastid | 69.28 | 70.2 |
| Zm00001d007394_P001 | Maize | plastid | 65.36 | 68.03 |
| EES09846 | Sorghum | plastid | 64.71 | 65.56 |
| Solyc03g118130.2.1 | Tomato | plastid | 56.86 | 55.06 |
| AT5G51010.1 | Thale cress | plastid | 54.9 | 54.55 |
| GSMUA_Achr10P... | Banana | plastid | 58.82 | 53.25 |
| Bra022748.1-P | Field mustard | plastid | 54.25 | 52.87 |
| KRH41049 | Soybean | nucleus, plastid | 54.25 | 52.87 |
| CDX84893 | Canola | plastid | 54.25 | 52.87 |
| KRH59722 | Soybean | nucleus | 52.94 | 52.6 |
| VIT_17s0000g00110.t01 | Wine grape | plastid | 55.56 | 52.47 |
| PGSC0003DMT400036930 | Potato | plastid | 54.25 | 51.88 |
| HORVU4Hr1G043650.2 | Barley | plastid | 83.01 | 50.4 |
| KRH63883 | Soybean | plastid | 52.29 | 48.48 |
| CDY45796 | Canola | plastid | 50.98 | 48.15 |
| KRH54078 | Soybean | plastid | 40.52 | 43.06 |
| GSMUA_Achr6P16380_001 | Banana | vacuole | 31.37 | 27.27 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G097300.1 | EnsemblPlantsGene:TraesCS4D01G097300 | Gene3D:2.20.28.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005506 |
| InterPro:IPR024934 | InterPro:Rubredoxin-like_dom | PANTHER:PTHR45299 | PFscan:PS50903 | SEG:seg | SUPFAM:SSF57802 |
| TMHMM:TMhelix | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:74094992..74096776
Molecular Weight (calculated)
16881.7 Da
IEP (calculated)
10.551
GRAVY (calculated)
-0.198
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MALQMQAPSL TRAPAGSPAR LRSAFCAPPL LVRVRLPAPG RARSAAAARI TMRFGRVETK QAYICRDCGY IYKDKTPFEK LSDDYYCPVC AAPKRRFRPY
101: EPPVAKNANA TDARKARKEQ LKKDETVGKA LPIGIAVGIV ALAALFFYLN SVY
101: EPPVAKNANA TDARKARKEQ LKKDETVGKA LPIGIAVGIV ALAALFFYLN SVY
001: MAMQLPPTTL YAGRSSVVLP PTTPTLQRSS FLPYYSMRLL GNKKSLSKSS APRFSMRVSS KQAYICRDCG YIYNDRTPFD KLPDNYFCPV CAAPKRRFRA
101: YMPDVSKNVN DKDVRKARKA ELQRDEAVGK ALPIGIAVGV LALAALYFYV NSTS
101: YMPDVSKNVN DKDVRKARKA ELQRDEAVGK ALPIGIAVGV LALAALYFYV NSTS
Arabidopsis Description
Rubredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FI47]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.