Factsheet for Solyc03g118130.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
nucleus 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g066880.2.1
Solyc02g071920.2.1
Solyc02g085000.2.1
Solyc03g005980.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51010.1	Solyc02g085000.2.1	AT3G50910.1	21798944
AT5G51010.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT5G51010.1	Solyc03g005980.2.1	AT4G19030.1	21798944
AT5G51010.1	Solyc01g066880.2.1	AT5G27690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036930	Potato	plastid	93.67	92.5
VIT_17s0000g00110.t01	Wine grape	plastid	68.35	66.67
EES09846	Sorghum	plastid	59.49	62.25
Zm00001d007394_P001	Maize	plastid	57.59	61.9
KRH59722	Soybean	nucleus	60.13	61.69
Os11t0528500-01	Rice	plastid	58.23	60.93
KRH41049	Soybean	nucleus, plastid	59.49	59.87
GSMUA_Achr10P...	Banana	plastid	63.29	59.17
AT5G51010.1	Thale cress	plastid	56.96	58.44
Bra022748.1-P	Field mustard	plastid	56.96	57.32
CDX84893	Canola	plastid	56.96	57.32
TraesCS4B01G100700.1	Wheat	plastid	55.06	56.86
TraesCS4D01G097300.1	Wheat	plastid	55.06	56.86
KRH63883	Soybean	plastid	58.86	56.36
TraesCS4A01G215500.1	Wheat	plastid	54.43	55.48
CDY45796	Canola	plastid	55.06	53.7
KRH54078	Soybean	plastid	44.94	49.31
HORVU4Hr1G043650.2	Barley	plastid	55.06	34.52
GSMUA_Achr6P16380_001	Banana	vacuole	32.91	29.55

Protein Annotations

Gene3D:2.20.28.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR024934	UniProt:K4BLW4	PFAM:PF00301	PFscan:PS50903
PANTHER:PTHR45299	InterPro:Rubredoxin-like_dom	InterPro:Rubredoxin_dom	SUPFAM:SSF57802	EnsemblPlantsGene:Solyc03g118130.2	EnsemblPlants:Solyc03g118130.2.1
TMHMM:TMhelix	UniParc:UPI0002767A5B	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:-:67081493..67083259

Molecular Weight (calculated)

17270.0 Da

IEP (calculated)

10.389

GRAVY (calculated)

-0.193

Length

158 amino acids

Sequence
(BLAST)

001: MAALQVPTRI PANLAPNGGL RQAPNGLALK SSFFSPSIHL LLPPPSFSRA APATAPKISM RVTSKQAYIC RDCGYIYNDK TPFEKLPDKY FCPVCGAPKR
101: RFRAYEPKVT KDANSTDVRK ARKEQLKRDE AVGNILPIAI GVGVVALAAL YFYVNNTS

Best Arabidopsis Sequence Match ( AT5G51010.1 )
(BLAST)

001: MAMQLPPTTL YAGRSSVVLP PTTPTLQRSS FLPYYSMRLL GNKKSLSKSS APRFSMRVSS KQAYICRDCG YIYNDRTPFD KLPDNYFCPV CAAPKRRFRA
101: YMPDVSKNVN DKDVRKARKA ELQRDEAVGK ALPIGIAVGV LALAALYFYV NSTS

Arabidopsis Description

Rubredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FI47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.