Factsheet for Solyc02g085000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g081390.2.1
Solyc01g088530.2.1
Solyc02g062570.2.1
Solyc02g062580.2.1
Solyc02g068270.2.1
Solyc02g084970.2.1
Solyc02g086650.2.1
Solyc02g091710.2.1
Solyc02g093090.1.1
Solyc02g093550.2.1
Solyc05g053220.2.1
Solyc07g054140.2.1
Solyc07g064470.2.1
Solyc09g065300.2.1
Solyc09g098390.2.1
Solyc10g006310.2.1
Solyc10g047150.1.1
Solyc10g079430.1.1
Solyc12g017250.1.1
Solyc12g088730.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50910.1	Solyc05g053220.2.1	AT1G54770.1	21798944
AT3G50910.1	Solyc12g017250.1.1	AT1G79040.1	21798944
AT3G50910.1	Solyc10g047150.1.1	AT2G20060.1	21798944
AT3G50910.1	Solyc12g088730.1.1	AT2G20060.1	21798944
AT3G50910.1	Solyc09g098390.2.1	AT2G43370.1	21798944
AT3G50910.1	Solyc02g086650.2.1	AT3G01550.1	21798944
AT3G50910.1	Solyc07g064470.2.1	AT3G20510.1	21798944
AT3G50910.1	Solyc10g006310.2.1	AT3G20510.1	21798944
AT3G50910.1	Solyc02g068270.2.1	AT3G51510.1	21798944
AT3G50910.1	Solyc01g088530.2.1	AT3G60200.1	21798944
AT3G50910.1	Solyc10g079430.1.1	AT3G60360.1	21798944
AT3G50910.1	Solyc09g065300.2.1	AT4G02725.1	21798944
AT3G50910.1	Solyc07g054140.2.1	AT5G05760.1	21798944
AT3G50910.1	Solyc01g081390.2.1	AT5G17630.1	21798944
AT3G50910.1	Solyc02g091710.2.1	AT5G65683.1	21798944
AT5G66480.1	Solyc02g093550.2.1	AT3G01660.1	21798944
AT5G66480.1	Solyc02g062570.2.1	AT3G50920.1	21798944
AT5G66480.1	Solyc02g062580.2.1	AT3G50920.1	21798944
AT5G66480.1	Solyc02g084970.2.1	AT3G50920.1	21798944
AT5G66480.1	Solyc07g054140.2.1	AT5G05760.1	21798944
AT5G66480.1	Solyc02g093090.1.1	AT5G67210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009054	Potato	nucleus, plastid	87.88	84.41
Zm00001d020667_P001	Maize	nucleus	14.72	51.13
CDX73773	Canola	cytosol	41.13	46.12
Bra012880.1-P	Field mustard	nucleus	40.69	46.08
CDX90677	Canola	nucleus	40.26	45.59
Bra037167.1-P	Field mustard	mitochondrion	20.78	45.5
Bra036850.1-P	Field mustard	plastid	40.69	45.3
CDY28989	Canola	nucleus	40.91	45.11
CDX77962	Canola	nucleus, plastid	40.48	45.06
KRH08190	Soybean	nucleus	41.13	43.58
KRH76747	Soybean	plastid	40.69	43.12
KRH28715	Soybean	cytosol	38.1	42.93
AT3G50910.1	Thale cress	cytosol	41.13	42.51
VIT_04s0023g02110.t01	Wine grape	endoplasmic reticulum	45.67	42.37
GSMUA_Achr1P12060_001	Banana	plastid	34.42	40.36
GSMUA_Achr6P08980_001	Banana	nucleus	35.28	39.76
GSMUA_Achr2P22980_001	Banana	cytosol, nucleus, peroxisome, plastid	34.85	38.7
AT5G66480.1	Thale cress	plastid	36.8	38.29
Solyc01g102500.2.1	Tomato	cytosol	30.3	37.04
CDY18608	Canola	nucleus	28.79	36.64
Os02t0704600-01	Rice	nucleus	34.63	35.09
HORVU6Hr1G068770.1	Barley	nucleus	34.42	35.02
TraesCS6D01G252200.1	Wheat	nucleus	33.77	34.74
TraesCS6A01G272000.1	Wheat	nucleus	33.98	34.73
TraesCS6B01G299600.1	Wheat	nucleus	33.98	34.28
CDY67893	Canola	nucleus	25.11	33.62
OQU85551	Sorghum	cytosol, plastid	32.9	33.55
Zm00001d038964_P001	Maize	nucleus	30.3	32.94
OQU78405	Sorghum	nucleus	30.3	32.86
Zm00001d051562_P001	Maize	plastid	30.09	31.52
Zm00001d017768_P006	Maize	cytosol	32.25	31.37
KRH69884	Soybean	nucleus	39.83	25.41

Protein Annotations

EnsemblPlants:Solyc02g085000.2.1	EnsemblPlantsGene:Solyc02g085000.2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	ncoils:Coil
PANTHER:PTHR35490	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002768E4D	UniProt:K4BB14	MapMan:35.2

Description

No Description!

Coordinates

chr2:-:48034034..48037779

Molecular Weight (calculated)

52138.8 Da

IEP (calculated)

4.648

GRAVY (calculated)

-0.748

Length

462 amino acids

Sequence
(BLAST)

001: MPTYTAIAMD RLIESGGSKS MTTSKIEASF DRSKNGSSSK LERKIIQTNV KMDDSNGKPS IIGDRKDHWT QISPALYTIP KPTPLPDSPS SFPPSPYIIN
101: HKRRGPRLSQ SFTEDDFGTQ QEALDGEKMD EKLRETKKDL SSKSLDDPSI SREAVNCVEE DNLLFATDNL VKDGEVTDLC DGELLHRDMH NGLSGQNGTM
201: KSVAFNLRRG GEADDFFDPQ ESLSVRSFGE SESNGGFQRC LSSMTPMGEF YDAWEELSSE NGPQLPTNDF ENELREIRLS LLTEIEKRKQ VEEVLSNMQT
301: QWQTIRERLS LVGLNFPSNP VAGVELDNEQ PDDQVEDLCQ QVHILRVVSE SIGKGIAKAE METEIETQIE SKNFEIARLW DRLNYYEAVN REMSQRNQEA
401: IETARRLRQI RKRRQKKLIW GSIAATITIG SAVLAWSYFF TGRESSSLDQ SHSREGDSAS EL

Best Arabidopsis Sequence Match ( AT3G50910.1 )
(BLAST)

001: MPTFSAIALD RMLEPGASTS VESVPSTTNL FYSKPPISKL EKGKGKLPNE RTVTRPLMSP ALYATPDAIP LPNSPSSFPP SPYIINHKSR GPPRLLKSSS
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE

Arabidopsis Description

AT3g50910/F18B3_190 [Source:UniProtKB/TrEMBL;Acc:Q94BX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.