Factsheet for Solyc09g098390.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005820.2.1
Solyc01g080660.2.1
Solyc01g096180.2.1
Solyc01g105140.2.1
Solyc01g110190.2.1
Solyc03g082980.2.1
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc03g115070.1.1
Solyc05g054920.2.1
Solyc06g009060.2.1
Solyc06g072990.1.1
Solyc08g069120.2.1
Solyc09g005980.2.1
Solyc09g075090.1.1
Solyc10g009330.2.1
Solyc10g054080.1.1
Solyc11g044880.1.1
Solyc12g013790.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43370.1	Solyc06g009060.2.1	AT1G02840.1	15987817
AT2G43370.1	Solyc09g075090.1.1	AT1G02840.1	15987817
AT2G43370.1	Solyc08g069120.2.1	AT2G24590.1	21798944
AT2G43370.1	Solyc05g054920.2.1	AT2G37340.1	15987817
AT2G43370.1	Solyc09g005980.2.1	AT2G37340.1	15987817
AT2G43370.1	Solyc01g005820.2.1	AT3G13570.1	15987817
AT2G43370.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT2G43370.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT2G43370.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT2G43370.1	Solyc06g072990.1.1	AT3G49580.1	21798944
AT2G43370.1	Solyc01g096180.2.1	AT3G61860.1	15987817
AT2G43370.1	Solyc10g009330.2.1	AT3G61860.1	15987817
AT2G43370.1	Solyc01g110190.2.1	AT4G39050.1	21798944
AT2G43370.1	Solyc10g054080.1.1	AT4G39050.1	21798944
AT2G43370.1	Solyc11g044880.1.1	AT4G39050.1	21798944
AT2G43370.1	Solyc01g080660.2.1	AT5G18810.1	15987817
AT2G43370.1	Solyc03g096760.1.1	AT5G24660.1	21798944
AT2G43370.1	Solyc03g096770.1.1	AT5G24660.1	21798944
AT2G43370.1	Solyc03g096780.1.1	AT5G24660.1	21798944
AT2G43370.1	Solyc06g072990.1.1	AT5G24660.1	21798944
AT2G43370.1	Solyc03g082980.2.1	AT5G53060.1	21798944
AT2G43370.1	Solyc12g013790.1.1	AT5G53800.1	21798944
AT2G43370.1	Solyc03g115070.1.1	AT5G61010.1	21798944
AT2G43370.1	Solyc01g105140.2.1	AT5G64200.2	15987817

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055636	Potato	nucleus	87.32	88.07
GSMUA_Achr8P09080_001	Banana	nucleus	52.39	67.39
CDX83484	Canola	nucleus	52.11	57.45
Bra000304.1-P	Field mustard	nucleus	51.83	57.32
CDY44222	Canola	nucleus	50.99	56.74
CDY22251	Canola	cytosol	24.51	56.49
VIT_05s0102g00080.t01	Wine grape	nucleus	54.08	56.47
KRH46935	Soybean	nucleus	50.99	55.35
KRH01744	Soybean	nucleus	52.68	53.89
AT2G43370.1	Thale cress	nucleus	49.3	52.55
CDY14697	Canola	cytosol, mitochondrion	26.48	51.93
CDY23361	Canola	endoplasmic reticulum	35.49	49.41
Os09t0513700-01	Rice	nucleus	49.3	46.67
TraesCS5D01G304800.1	Wheat	nucleus	50.99	43.2
EER97037	Sorghum	nucleus	49.86	40.5
TraesCS5A01G298000.1	Wheat	nucleus	49.58	39.55
TraesCS5B01G297000.2	Wheat	nucleus	50.7	38.3
HORVU5Hr1G078170.27	Barley	nucleus	47.32	36.36
Zm00001d021137_P002	Maize	nucleus	40.85	29.65
Solyc02g085420.2.1	Tomato	nucleus	26.2	19.46

Protein Annotations

MapMan:16.4.4.1.1	Gene3D:3.30.70.330	GO:GO:0000243	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005689	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0017069	GO:GO:0034693	GO:GO:0071011	InterPro:IPR000504	InterPro:IPR012677	UniProt:K4CX09
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR13952	PANTHER:PTHR13952:SF6	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc09g098390.2	EnsemblPlants:Solyc09g098390.2.1	UniParc:UPI000276C35D
SEG:seg	InterPro:snRNP35_RRM	:	:	:	:

Description

No Description!

Coordinates

chr9:-:72218511..72223539

Molecular Weight (calculated)

40860.5 Da

IEP (calculated)

10.370

GRAVY (calculated)

-1.269

Length

355 amino acids

Sequence
(BLAST)

001: MAGEEVKGKR CGANLNSVFY AESYHPIQAG SIDGTDILPH DNAIYRALLG SNAGLYDPFG DPKAIGDPYS TLFVGHLSHL TTEHTLQKEM NKYGKVKNLR
101: IVRHIVTGAS RGYAFVEFET DREMRRAYTD AHHKVIDDSE IIVDYNRQRL MSGWIPRRLG GGLGGKKESG QLRFGGRERP FRAPLRPIPW DDLKRLGIPP
201: PPEGRYMSRF QAPSPPRRAR SLEDAGDSSH KHDKRSNHSH RQDRSISRER SSGRQERSMD MEDFSHRQRT HEKKRGDRRS PSHDYSSDRS SMDRSRHSRM
301: RQKSSRDRQD MKSPSLDHSS DETSKYREQR RQSHNARSHG DDRWSPRTDD PFGET

Best Arabidopsis Sequence Match ( AT2G43370.1 )
(BLAST)

001: MSGGGNNVVN KVFYATSYHP IQAGSIDGTD VAPHDNGVRR ALLCYNAGLY DPSGDSKAVG DPYCTLFVGR LSHHTTEDTL REVMSKYGRI KNLRLVRHIV
101: TGASRGYGFV EYETEKEMLR AYEDAHHSLI DGREIIVDYN RQQLMPGWIP RRLGGGLGGR KESGQLRFGG RDRPFRAPLR PIPHEDLKKL GIQLPPEGRY
201: MSRTQIPSPP RRKGSVSDRE EEYYREKSSV EREEEFKERS SLRSYHSHRS SAHTHSSHRR RSKDREECSR EESRSDRKER ARGMEDRYGD NKGEVSGSKR
301: SKRSEEDRSR KRHKHLPSHH HRRSYSQDHH SSD

Arabidopsis Description

SNRNP35U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:Q8VY74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.