Factsheet for Solyc01g096180.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005820.2.1
Solyc01g099810.2.1
Solyc07g066420.2.1
Solyc09g098390.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61860.1	Solyc01g099810.2.1	AT1G09140.1	21798944
AT3G61860.1	Solyc07g066420.2.1	AT1G53720.1	16497658
AT3G61860.1	Solyc09g098390.2.1	AT2G43370.1	15987817
AT3G61860.1	Solyc01g005820.2.1	AT3G13570.1	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000674	Potato	nucleus	81.22	82.92
Solyc10g009330.2.1	Tomato	nucleus	58.78	69.57
VIT_15s0046g00060.t01	Wine grape	endoplasmic reticulum	60.0	65.62
KRH47859	Soybean	nucleus	68.16	64.48
KRH06424	Soybean	nucleus	68.57	63.64
HORVU3Hr1G039480.2	Barley	cytosol, nucleus	15.51	62.3
AT2G46610.1	Thale cress	nucleus	60.82	59.6
EES11769	Sorghum	nucleus	57.14	58.82
TraesCS2A01G009400.2	Wheat	nucleus	58.78	58.78
AT3G61860.1	Thale cress	nucleus	62.86	58.33
Os04t0118900-01	Rice	nucleus	57.96	57.96
TraesCS2D01G010300.1	Wheat	nucleus	56.73	54.94
EER92984	Sorghum	nucleus	57.55	53.01
Solyc01g091750.2.1	Tomato	nucleus	46.53	52.29
TraesCS4B01G398900.1	Wheat	nucleus	56.73	50.92
TraesCS5A01G555800.1	Wheat	nucleus	55.51	50.37
TraesCSU01G114200.1	Wheat	nucleus	54.29	49.26
HORVU4Hr1G088790.4	Barley	nucleus	54.69	48.38
GSMUA_Achr11P...	Banana	extracellular, plastid	53.88	48.35
CDY22958	Canola	cytosol	11.84	41.43
CDX81436	Canola	cytosol	11.84	41.43
Solyc03g026240.2.1	Tomato	nucleus	51.43	36.73
Solyc11g072340.1.1	Tomato	nucleus	52.65	36.44
Zm00001d004425_P001	Maize	cytosol	16.33	32.79

Protein Annotations

MapMan:16.4.6.3	Gene3D:3.30.70.330	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677
UniProt:K4B007	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF3
InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RS31	InterPro:RSP31/31A/40/41	SMART:SM00360	SUPFAM:SSF54928
EnsemblPlantsGene:Solyc01g096180.2	EnsemblPlants:Solyc01g096180.2.1	UniParc:UPI0002767894	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:87273838..87277051

Molecular Weight (calculated)

29133.3 Da

IEP (calculated)

9.669

GRAVY (calculated)

-0.947

Length

245 amino acids

Sequence
(BLAST)

001: MRPLFVGNIE YDIRQPELER LFSKYGRIER LDMKSGLHIL AGFAFVYFED ERDAADAIRC LDNMPFGYDK RRLSVEWAKG DRVQPRDDSK VSANQRPTRS
101: LFVINFDPIR TRVRDIERHF EPYGKILNVR IRRNFAFVQF ENLEDASKAL ECTHMSEILD RVVSVEYALR DDGERGDRYD SPRRDYIRHG DSPYRRSPSP
201: MYRRGRPSPD YGRPGIPAYD KYNGSSYDRY RSPEYGSYRR FPVRR

Best Arabidopsis Sequence Match ( AT3G61860.1 )
(BLAST)

001: MRPVFVGNFE YETRQSDLER LFDKYGRVDR VDMKSGYAFV YFEDERDAED AIRKLDNFPF GYEKRRLSVE WAKGERGRPR GDAKAPSNLK PTKTLFVINF
101: DPIRTKEHDI EKHFEPYGKV TNVRIRRNFS FVQFETQEDA TKALEATQRS KILDRVVSVE YALKDDDERD DRNGGRSPRR SLSPVYRRRP SPDYGRRPSP
201: GQGRRPSPDY GRARSPEYDR YKGPAAYERR RSPDYGRRSS DYGRQRSPGY DRYRSRSPVP RGRP

Arabidopsis Description

RS31RSP31 [Source:UniProtKB/TrEMBL;Acc:A0A178VG60]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.