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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc10g009330.2.1 Tomato nucleus 53.6 64.73
PGSC0003DMT400000674 Potato nucleus 60.0 62.5
AT3G61860.1 Thale cress nucleus 65.6 62.12
PGSC0003DMT400048580 Potato extracellular, nucleus 62.4 61.9
KRH47859 Soybean nucleus 64.0 61.78
Solyc01g096180.2.1 Tomato nucleus 59.6 60.82
VIT_15s0046g00060.t01 Wine grape endoplasmic reticulum 53.6 59.82
KRH06424 Soybean nucleus 62.8 59.47
Os04t0118900-01 Rice nucleus 58.0 59.18
HORVU3Hr1G039480.2 Barley cytosol, nucleus 14.4 59.02
EES11769 Sorghum nucleus 54.4 57.14
TraesCS2A01G009400.2 Wheat nucleus 55.6 56.73
TraesCS2D01G010300.1 Wheat nucleus 56.0 55.34
EER92984 Sorghum nucleus 54.0 50.75
TraesCS4B01G398900.1 Wheat nucleus 54.0 49.45
TraesCS5A01G555800.1 Wheat nucleus 52.4 48.52
TraesCSU01G114200.1 Wheat nucleus 51.2 47.41
HORVU4Hr1G088790.4 Barley nucleus 50.8 45.85
GSMUA_Achr11P... Banana extracellular, plastid 48.0 43.96
CDX81436 Canola cytosol 11.2 40.0
CDY22958 Canola cytosol 11.2 40.0
AT4G25500.4 Thale cress nucleus 53.2 38.0
AT5G52040.2 Thale cress nucleus 54.0 37.82
Zm00001d004425_P001 Maize cytosol 15.2 31.15
Protein Annotations
MapMan:16.4.6.3Gene3D:3.30.70.330EntrezGene:819273ProteinID:AAD20171.1ProteinID:AEC10728.1ProteinID:AEC10729.1
EMBL:AK317202ArrayExpress:AT2G46610EnsemblPlantsGene:AT2G46610RefSeq:AT2G46610TAIR:AT2G46610RefSeq:AT2G46610-TAIR-G
EnsemblPlants:AT2G46610.1TAIR:AT2G46610.1EMBL:AY065237EMBL:BT000995GO:GO:0000398GO:GO:0003674
GO:GO:0003676GO:GO:0003723GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005654GO:GO:0005681GO:GO:0006139GO:GO:0006397
GO:GO:0008150GO:GO:0008152GO:GO:0008380GO:GO:0009987GO:GO:0016607InterPro:IPR000504
InterPro:IPR012677RefSeq:NP_182184.1RefSeq:NP_973702.1InterPro:Nucleotide-bd_a/b_plait_sfPFAM:PF00076PO:PO:0000005
PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019
PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029
PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052
PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PFscan:PS50102
PANTHER:PTHR44257PANTHER:PTHR44257:SF3UniProt:Q9ZPX8InterPro:RBD_domain_sfInterPro:RRM_domInterPro:RS31
Symbol:RS31aInterPro:RSP31/31A/40/41SMART:SM00360SUPFAM:SSF54928UniParc:UPI00000AC5FDSEG:seg
Description
RS31ASerine/arginine-rich splicing factor RS31A [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPX8]
Coordinates
chr2:-:19136566..19138762
Molecular Weight (calculated)
29682.6 Da
IEP (calculated)
10.786
GRAVY (calculated)
-1.307
Length
250 amino acids
Sequence
(BLAST)
001: MRHVYVGNFD YDTRHSDLER LFSKFGRVKR VDMKSGYAFV YFEDERDAED AIRRTDNTTF GYGRRKLSVE WAKDFQGERG KPRDGKAVSN QRPTKTLFVI
101: NFDPIRTRER DMERHFEPYG KVLNVRMRRN FAFVQFATQE DATKALDSTH NSKLLDKVVS VEYALREAGE REDRYAGSRR RRSPSPVYRR RPSPDYTRRR
201: SPEYDRYKGP APYERRKSPD YGRRSSDYGR ARARSPGYDR SRSPIQRARG
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.