Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc10g009330.2.1 | Tomato | nucleus | 53.6 | 64.73 |
PGSC0003DMT400000674 | Potato | nucleus | 60.0 | 62.5 |
AT3G61860.1 | Thale cress | nucleus | 65.6 | 62.12 |
PGSC0003DMT400048580 | Potato | extracellular, nucleus | 62.4 | 61.9 |
KRH47859 | Soybean | nucleus | 64.0 | 61.78 |
Solyc01g096180.2.1 | Tomato | nucleus | 59.6 | 60.82 |
VIT_15s0046g00060.t01 | Wine grape | endoplasmic reticulum | 53.6 | 59.82 |
KRH06424 | Soybean | nucleus | 62.8 | 59.47 |
Os04t0118900-01 | Rice | nucleus | 58.0 | 59.18 |
HORVU3Hr1G039480.2 | Barley | cytosol, nucleus | 14.4 | 59.02 |
EES11769 | Sorghum | nucleus | 54.4 | 57.14 |
TraesCS2A01G009400.2 | Wheat | nucleus | 55.6 | 56.73 |
TraesCS2D01G010300.1 | Wheat | nucleus | 56.0 | 55.34 |
EER92984 | Sorghum | nucleus | 54.0 | 50.75 |
TraesCS4B01G398900.1 | Wheat | nucleus | 54.0 | 49.45 |
TraesCS5A01G555800.1 | Wheat | nucleus | 52.4 | 48.52 |
TraesCSU01G114200.1 | Wheat | nucleus | 51.2 | 47.41 |
HORVU4Hr1G088790.4 | Barley | nucleus | 50.8 | 45.85 |
GSMUA_Achr11P... | Banana | extracellular, plastid | 48.0 | 43.96 |
CDX81436 | Canola | cytosol | 11.2 | 40.0 |
CDY22958 | Canola | cytosol | 11.2 | 40.0 |
AT4G25500.4 | Thale cress | nucleus | 53.2 | 38.0 |
AT5G52040.2 | Thale cress | nucleus | 54.0 | 37.82 |
Zm00001d004425_P001 | Maize | cytosol | 15.2 | 31.15 |
Protein Annotations
MapMan:16.4.6.3 | Gene3D:3.30.70.330 | EntrezGene:819273 | ProteinID:AAD20171.1 | ProteinID:AEC10728.1 | ProteinID:AEC10729.1 |
EMBL:AK317202 | ArrayExpress:AT2G46610 | EnsemblPlantsGene:AT2G46610 | RefSeq:AT2G46610 | TAIR:AT2G46610 | RefSeq:AT2G46610-TAIR-G |
EnsemblPlants:AT2G46610.1 | TAIR:AT2G46610.1 | EMBL:AY065237 | EMBL:BT000995 | GO:GO:0000398 | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005681 | GO:GO:0006139 | GO:GO:0006397 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0016607 | InterPro:IPR000504 |
InterPro:IPR012677 | RefSeq:NP_182184.1 | RefSeq:NP_973702.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PO:PO:0000005 |
PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50102 |
PANTHER:PTHR44257 | PANTHER:PTHR44257:SF3 | UniProt:Q9ZPX8 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RS31 |
Symbol:RS31a | InterPro:RSP31/31A/40/41 | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00000AC5FD | SEG:seg |
Description
RS31ASerine/arginine-rich splicing factor RS31A [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPX8]
Coordinates
chr2:-:19136566..19138762
Molecular Weight (calculated)
29682.6 Da
IEP (calculated)
10.786
GRAVY (calculated)
-1.307
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MRHVYVGNFD YDTRHSDLER LFSKFGRVKR VDMKSGYAFV YFEDERDAED AIRRTDNTTF GYGRRKLSVE WAKDFQGERG KPRDGKAVSN QRPTKTLFVI
101: NFDPIRTRER DMERHFEPYG KVLNVRMRRN FAFVQFATQE DATKALDSTH NSKLLDKVVS VEYALREAGE REDRYAGSRR RRSPSPVYRR RPSPDYTRRR
201: SPEYDRYKGP APYERRKSPD YGRRSSDYGR ARARSPGYDR SRSPIQRARG
101: NFDPIRTRER DMERHFEPYG KVLNVRMRRN FAFVQFATQE DATKALDSTH NSKLLDKVVS VEYALREAGE REDRYAGSRR RRSPSPVYRR RPSPDYTRRR
201: SPEYDRYKGP APYERRKSPD YGRRSSDYGR ARARSPGYDR SRSPIQRARG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.