Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX81436 | Canola | cytosol | 21.31 | 37.14 |
| CDY22958 | Canola | cytosol | 21.31 | 37.14 |
| Zm00001d025063_P002 | Maize | cytosol | 42.62 | 19.4 |
| KRH47859 | Soybean | nucleus | 37.7 | 17.76 |
| Zm00001d004477_P005 | Maize | cytosol | 42.62 | 17.28 |
| PGSC0003DMT400000674 | Potato | nucleus | 33.61 | 17.08 |
| KRH06424 | Soybean | nucleus | 36.89 | 17.05 |
| PGSC0003DMT400048580 | Potato | extracellular, nucleus | 34.43 | 16.67 |
| Solyc01g096180.2.1 | Tomato | nucleus | 32.79 | 16.33 |
| AT2G46610.1 | Thale cress | nucleus | 31.15 | 15.2 |
| AT3G61860.1 | Thale cress | nucleus | 31.97 | 14.77 |
| Zm00001d048505_P001 | Maize | nucleus | 27.05 | 12.94 |
| Solyc10g009330.2.1 | Tomato | nucleus | 16.39 | 9.66 |
| GSMUA_Achr11P... | Banana | extracellular, plastid | 17.21 | 7.69 |
| VIT_15s0046g00060.t01 | Wine grape | endoplasmic reticulum | 13.93 | 7.59 |
Protein Annotations
| Gene3D:1.10.8.60 | Gene3D:3.30.70.330 | MapMan:35.2 | UniProt:A0A1D6EFB6 | GO:GO:0000398 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005681 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:ONM18886.1 | PFAM:PF00076 | PANTHER:PTHR44257 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | InterPro:RSP31/31A/40/41 | SUPFAM:SSF54928 | UniParc:UPI000842C489 | EnsemblPlantsGene:Zm00001d004425 | EnsemblPlants:Zm00001d004425_P001 |
| EnsemblPlants:Zm00001d004425_T001 | : | : | : | : | : |
Description
Serine/arginine-rich splicing factor RS31A
Coordinates
chr2:+:110923398..110926029
Molecular Weight (calculated)
14087.8 Da
IEP (calculated)
5.686
GRAVY (calculated)
-0.527
Length
122 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPIFVGNLD YDTRHSELDR LFYRYGRVER IDMKSAIDGF DIGQGKFTCD CRERYSGSDL RALCEEAAMM PTRELDPHNI LTVKANQVRP QLAETEVAHI
101: GQVALVTQPK WLETSMEPKY AY
101: GQVALVTQPK WLETSMEPKY AY
001: MRHVYVGNFD YDTRHSDLER LFSKFGRVKR VDMKSGYAFV YFEDERDAED AIRRTDNTTF GYGRRKLSVE WAKDFQGERG KPRDGKAVSN QRPTKTLFVI
101: NFDPIRTRER DMERHFEPYG KVLNVRMRRN FAFVQFATQE DATKALDSTH NSKLLDKVVS VEYALREAGE REDRYAGSRR RRSPSPVYRR RPSPDYTRRR
201: SPEYDRYKGP APYERRKSPD YGRRSSDYGR ARARSPGYDR SRSPIQRARG
101: NFDPIRTRER DMERHFEPYG KVLNVRMRRN FAFVQFATQE DATKALDSTH NSKLLDKVVS VEYALREAGE REDRYAGSRR RRSPSPVYRR RPSPDYTRRR
201: SPEYDRYKGP APYERRKSPD YGRRSSDYGR ARARSPGYDR SRSPIQRARG
Arabidopsis Description
RS31ASerine/arginine-rich splicing factor RS31A [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPX8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.