Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- golgi 4
- plasma membrane 4
- endoplasmic reticulum 5
- vacuole 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d016504_P001 | Maize | nucleus | 19.91 | 57.33 |
| Zm00001d019443_P002 | Maize | nucleus | 25.0 | 50.94 |
| Zm00001d010176_P001 | Maize | cytosol | 25.93 | 49.12 |
| Zm00001d012570_P002 | Maize | extracellular | 36.57 | 48.47 |
| Zm00001d029629_P001 | Maize | nucleus | 8.8 | 42.22 |
| Zm00001d005285_P001 | Maize | nucleus | 27.78 | 41.96 |
| Zm00001d015189_P001 | Maize | nucleus | 28.7 | 35.23 |
| Zm00001d010881_P001 | Maize | nucleus | 28.7 | 33.88 |
| Os03t0374575-01 | Rice | nucleus | 32.87 | 32.72 |
| Zm00001d004470_P001 | Maize | nucleus | 16.67 | 32.43 |
| EER92211 | Sorghum | nucleus | 31.94 | 32.39 |
| Zm00001d047401_P001 | Maize | nucleus | 31.94 | 31.94 |
| Zm00001d029305_P001 | Maize | nucleus | 23.15 | 30.49 |
| Zm00001d004722_P001 | Maize | cytosol | 14.81 | 30.19 |
| Bra034794.1-P | Field mustard | nucleus | 27.31 | 28.5 |
| Zm00001d005739_P004 | Maize | cytosol | 14.35 | 28.18 |
| VIT_06s0004g00710.t01 | Wine grape | nucleus | 31.94 | 28.16 |
| GSMUA_Achr9P21660_001 | Banana | nucleus | 31.94 | 28.16 |
| CDY08473 | Canola | nucleus | 26.39 | 27.8 |
| Zm00001d022243_P002 | Maize | nucleus | 26.85 | 27.75 |
| GSMUA_Achr4P13560_001 | Banana | nucleus | 27.78 | 27.65 |
| KRH72576 | Soybean | nucleus | 31.94 | 27.27 |
| KRH16958 | Soybean | nucleus | 31.02 | 26.91 |
| CDY01078 | Canola | nucleus | 27.31 | 24.79 |
| AT3G13570.1 | Thale cress | nucleus | 29.17 | 24.05 |
| PGSC0003DMT400081835 | Potato | nucleus | 26.85 | 23.39 |
| Zm00001d043759_P001 | Maize | cytosol | 16.67 | 23.38 |
| Solyc01g005820.2.1 | Tomato | nucleus | 26.85 | 23.02 |
| PGSC0003DMT400010908 | Potato | nucleus | 27.31 | 21.07 |
| AT1G55310.3 | Thale cress | nucleus | 29.17 | 21.07 |
| Zm00001d029256_P002 | Maize | nucleus | 22.22 | 19.59 |
| KRH38014 | Soybean | endoplasmic reticulum, nucleus | 25.46 | 19.23 |
| Zm00001d006906_P010 | Maize | mitochondrion | 20.83 | 17.86 |
| Zm00001d048609_P001 | Maize | nucleus, plastid | 23.15 | 17.36 |
| Zm00001d022189_P002 | Maize | nucleus | 18.98 | 16.14 |
| Zm00001d030739_P002 | Maize | mitochondrion, nucleus, plastid | 23.15 | 13.55 |
| Zm00001d052803_P004 | Maize | nucleus | 18.06 | 12.96 |
| Zm00001d031269_P002 | Maize | nucleus | 17.13 | 10.76 |
| Zm00001d029380_P002 | Maize | cytosol, nucleus, plasma membrane | 14.35 | 7.18 |
Protein Annotations
| EnsemblPlants:Zm00001d013841_P001 | EnsemblPlants:Zm00001d013841_T001 | EnsemblPlantsGene:Zm00001d013841 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF11 | ProteinID:AQK64540.1 |
| SEG:seg | UniParc:UPI00084296E8 | UniProt:A0A1D6GMN1 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr5:-:22112259..22113747
Molecular Weight (calculated)
24466.3 Da
IEP (calculated)
10.038
GRAVY (calculated)
-0.124
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MFMRCLLLHI AMIMDYSLIL HYCNLAVITT IGLITFVDHL ENLASLKTYI CQRITKIDKY HMDGKMLLGR EINVVFAEEN RKKPSDMRAR EKISGRGCSY
101: DRRLRSRSPG LNDSPRGRSR SQSRSYSPAL KQKHCSRYEL LPSSYMLMKT PCARSVPIQL IGSHTILTCP RLLDLGRDLC RVPQLSTDQG VQAPLLAGLL
201: VGRGLSLLAS EWVVNQ
101: DRRLRSRSPG LNDSPRGRSR SQSRSYSPAL KQKHCSRYEL LPSSYMLMKT PCARSVPIQL IGSHTILTCP RLLDLGRDLC RVPQLSTDQG VQAPLLAGLL
201: VGRGLSLLAS EWVVNQ
001: MDPADAADAK HHMDGYLLLG RELTVVFAEE NRKKPTEMRA RERGGGSRFR DRRRTPPRYY SRSRSPPPRR GRSRSRSGDY YSPPPRRHHP RSISPREERY
101: DGRRSYSRSP ASDGSRGRSL TPVRGKSRSL SPSPRRSISR SPRRSRSPSP KRNRSVSPRR SISRSPRRSR SPRRSRRSYT PEPARSRSQS PHGGQYDEDR
201: SPSQ
101: DGRRSYSRSP ASDGSRGRSL TPVRGKSRSL SPSPRRSISR SPRRSRSPSP KRNRSVSPRR SISRSPRRSR SPRRSRRSYT PEPARSRSQS PHGGQYDEDR
201: SPSQ
Arabidopsis Description
SR33SC35-like splicing factor 33 [Source:TAIR;Acc:AT1G55310]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.