Factsheet for VIT_06s0004g00710.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P13560_001	Banana	nucleus	64.08	72.35
Os03t0374575-01	Rice	nucleus	62.04	70.05
GSMUA_Achr9P21660_001	Banana	nucleus	69.39	69.39
EER92211	Sorghum	nucleus	59.59	68.54
EER97602	Sorghum	nucleus	57.14	66.99
Zm00001d047401_P001	Maize	nucleus	58.78	66.67
Zm00001d022243_P002	Maize	nucleus	56.73	66.51
Os07t0633200-02	Rice	nucleus	57.55	66.2
TraesCS2A01G155100.1	Wheat	nucleus	53.88	64.39
TraesCS2D01G160400.1	Wheat	nucleus	53.88	64.39
TraesCS2B01G180200.1	Wheat	nucleus	53.88	63.77
HORVU2Hr1G028210.9	Barley	nucleus	53.06	62.5
Zm00001d019443_P002	Maize	nucleus	26.94	62.26
Zm00001d029629_P001	Maize	nucleus	11.02	60.0
Zm00001d004470_P001	Maize	nucleus	26.12	57.66
Zm00001d016504_P001	Maize	nucleus	17.55	57.33
Zm00001d005285_P001	Maize	nucleus	32.65	55.94
Zm00001d029305_P001	Maize	nucleus	34.29	51.22
Zm00001d010881_P001	Maize	nucleus	36.33	48.63
Zm00001d015189_P001	Maize	nucleus	28.16	39.2
VIT_14s0030g00480.t01	Wine grape	nucleus	45.71	39.02
Zm00001d012570_P002	Maize	extracellular	25.31	38.04
Zm00001d005739_P004	Maize	cytosol	16.73	37.27
Zm00001d043759_P001	Maize	cytosol	22.04	35.06
Zm00001d010176_P001	Maize	cytosol	15.92	34.21
VIT_13s0019g01060.t01	Wine grape	nucleus	48.16	33.43
Zm00001d013841_P001	Maize	endoplasmic reticulum, extracellular, vacuole	28.16	31.94
VIT_18s0001g05550.t01	Wine grape	nucleus	32.65	31.13
VIT_12s0142g00110.t01	Wine grape	nucleus	31.43	30.2
Zm00001d004722_P001	Maize	cytosol	11.84	27.36

Protein Annotations

EntrezGene:100263951	wikigene:100263951	MapMan:16.4.6.2	Gene3D:3.30.70.330	ProteinID:CCB43798	ProteinID:CCB43798.1
UniProt:F6GUK3	EMBL:FN594951	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100263951	wikigene:LOC100263951	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR23147	PANTHER:PTHR23147:SF41	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	TIGR:TC61299	UniParc:UPI00019835C8	ArrayExpress:VIT_06s0004g00710	EnsemblPlantsGene:VIT_06s0004g00710	EnsemblPlants:VIT_06s0004g00710.t01
unigene:Vvi.9703	RefSeq:XP_002285703	RefSeq:XP_002285703.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:840646..845903

Molecular Weight (calculated)

28536.1 Da

IEP (calculated)

11.559

GRAVY (calculated)

-1.557

Length

245 amino acids

Sequence
(BLAST)

001: MRGRSYSPSP PRGYGRRGRS PSPRGRYGGR GSARDLPTSL LVRNLRHDCR GEDLRRPFGQ FGPLKDIYLP RDYYTGEPRG FGFVQYVDPA DAAEAKYQMD
101: GQILHGRELT VVFAEENRKK PSDMRARERG RGRFYDRRRS PLRYSRSPPP RHARSPSRGR DYYSPSPKRR QYSRSVSPQD RRYSRDRSYT PDGRRRSYTR
201: SPPYNGSRSR SQSPIRGESP SRLQSRSPDP EDYPREAVRD RSPSE

Best Arabidopsis Sequence Match ( AT3G13570.1 )
(BLAST)

001: MRGRSYTPSP PRGYGRRGRS PSPRGRFGGS RDSDLPTSLL VRNLRHDCRQ EDLRRPFEQF GPVKDIYLPR DYYTGDPRGF GFIQFMDPAD AAEAKHQMDG
101: YLLLGRELTV VFAEENRKKP TEMRTRDRGG RSNRFQDRRR SPPRYSRSPP PRRGRRSRSR SRGYNSPPAK RHQSRSVSPQ DRRYEKERSY SRSPPHNGSR
201: VRSGSPGRVK SHSRSPRRSV SPRKNRSYTP EQARSQSPVP RQSRSPTPVP RGAQNGDRSP SQ

Arabidopsis Description

SCL30ASerine/arginine-rich SC35-like splicing factor SCL30A [Source:UniProtKB/Swiss-Prot;Acc:Q9LHP2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.