Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
- plastid 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d022243_P002 | Maize | nucleus | 78.4 | 79.9 |
| EER97602 | Sorghum | nucleus | 78.4 | 79.9 |
| TraesCS2B01G180200.1 | Wheat | nucleus | 76.53 | 78.74 |
| TraesCS2A01G155100.1 | Wheat | nucleus | 75.59 | 78.54 |
| HORVU2Hr1G028210.9 | Barley | nucleus | 76.53 | 78.37 |
| TraesCS2D01G160400.1 | Wheat | nucleus | 75.12 | 78.05 |
| Os03t0374575-01 | Rice | nucleus | 72.77 | 71.43 |
| Bra034794.1-P | Field mustard | nucleus | 62.44 | 64.25 |
| CDY08473 | Canola | nucleus | 61.5 | 63.9 |
| GSMUA_Achr4P13560_001 | Banana | nucleus | 63.85 | 62.67 |
| GSMUA_Achr9P21660_001 | Banana | nucleus | 69.48 | 60.41 |
| VIT_06s0004g00710.t01 | Wine grape | nucleus | 66.2 | 57.55 |
| KRH16958 | Soybean | nucleus | 67.14 | 57.43 |
| CDY01078 | Canola | nucleus | 62.44 | 55.88 |
| KRH72576 | Soybean | nucleus | 66.2 | 55.73 |
| Solyc01g005820.2.1 | Tomato | nucleus | 61.5 | 51.98 |
| PGSC0003DMT400081835 | Potato | nucleus | 60.09 | 51.61 |
| AT3G13570.1 | Thale cress | nucleus | 60.56 | 49.24 |
| PGSC0003DMT400010908 | Potato | nucleus | 61.5 | 46.79 |
| AT1G55310.3 | Thale cress | nucleus | 61.5 | 43.81 |
| KRH38014 | Soybean | endoplasmic reticulum, nucleus | 56.34 | 41.96 |
| Os02t0252100-02 | Rice | nucleus | 48.36 | 38.87 |
| Os12t0572400-01 | Rice | nucleus | 47.89 | 38.78 |
| Os03t0363800-01 | Rice | nucleus | 40.85 | 35.8 |
| Os03t0388000-01 | Rice | mitochondrion, nucleus | 27.23 | 28.29 |
| Os07t0623300-01 | Rice | nucleus | 32.39 | 25.09 |
| Os08t0486200-02 | Rice | nucleus | 27.23 | 20.07 |
| Os11t0704700-01 | Rice | nucleus | 38.5 | 16.05 |
Protein Annotations
| MapMan:16.4.6.2 | Gene3D:3.30.70.330 | EntrezGene:4344009 | EMBL:AK061338 | ProteinID:BAC79901.1 | ProteinID:BAF22286.1 |
| ProteinID:BAT02791.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os07g0633200 | EnsemblPlants:Os07t0633200-02 | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR23147 | PANTHER:PTHR23147:SF41 | UniProt:Q7XI49 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI00001B3A8C | RefSeq:XP_015647108.1 | RefSeq:XP_015647109.1 | SEG:seg | : |
Description
Similar to SC35-like splicing factor SCL30a, 30a kD. (Os07t0633200-01);Similar to SC35-like splicing factor SCL30a, 30a kD. (Os07t0633200-02)
Coordinates
chr7:+:26265545..26268672
Molecular Weight (calculated)
24821.9 Da
IEP (calculated)
11.035
GRAVY (calculated)
-1.365
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGYSYSPS PPPRSYRRRA SSPIPRDRYG GRGRDLPTSL LVRNLRRDCR PEDLRRPFGQ FGRLKDIYIP RDYYSGEPRG FGFVQYYDPD DAADAKYYMD
101: GQVILGREVA VVFAEENRKK PSEMRSRDRI SGSRGRSYDQ RYSRSPRYSP PPRGRSPYRS PSYSRSPSPR YARRRMRERS YSPVESRSRS RSPVEEGYGG
201: GSTRRERSLS VSE
101: GQVILGREVA VVFAEENRKK PSEMRSRDRI SGSRGRSYDQ RYSRSPRYSP PPRGRSPYRS PSYSRSPSPR YARRRMRERS YSPVESRSRS RSPVEEGYGG
201: GSTRRERSLS VSE
001: MRGRSYTPSP PRGYGRRGRS PSPRGRYGGR SRDLPTSLLV RNLRHDCRQE DLRKSFEQFG PVKDIYLPRD YYTGDPRGFG FVQFMDPADA ADAKHHMDGY
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPTQEEA
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPTQEEA
Arabidopsis Description
SR33SC35-like splicing factor 33 [Source:TAIR;Acc:AT1G55310]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.