Factsheet for Os02t0252100-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plasma membrane: 15069638
nucleus: 19621931

msms PMID: 15069638 doi

N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0155600-01
Os01t0316600-01
Os01t0590900-01
Os01t0667800-01
Os02t0252100-02
Os02t0732200-01
Os03t0285900-01
Os03t0344100-02
Os03t0363800-01
Os03t0374575-01
Os03t0681900-01
Os04t0118900-01
Os05t0120100-01
Os05t0162600-01
Os05t0364600-01
Os05t0564200-01
Os06t0670400-00
Os06t0670500-01
Os07t0623300-01
Os07t0633200-02
Os07t0673500-01
Os09t0491756-01
Os09t0513700-01
Os11t0704700-01
Os12t0572400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55460.1	Os01t0316600-01	AT1G02840.1	18674533
AT3G55460.1	Os03t0344100-02	AT1G02840.1	18674533
AT3G55460.1	Os05t0364600-01	AT1G02840.1	18674533
AT3G55460.1	Os07t0673500-01	AT1G02840.1	18674533
AT3G55460.1	Os01t0316600-01	AT1G09140.1	18674533
AT3G55460.1	Os03t0344100-02	AT1G09140.1	18674533
AT3G55460.1	Os05t0364600-01	AT1G09140.1	18674533
AT3G55460.1	Os07t0673500-01	AT1G09140.1	18674533
AT3G55460.1	Os06t0670400-00	AT1G53720.1	16497658
AT3G55460.1	Os06t0670500-01	AT1G53720.1	16497658
AT3G55460.1	Os02t0732200-01	AT1G71020.1	21798944
AT3G55460.1	Os01t0155600-01	AT2G37340.1	18674533
AT3G55460.1	Os03t0285900-01	AT2G37340.1	18674533
AT3G55460.1	Os05t0120100-01	AT2G37340.1	18674533
AT3G55460.1	Os05t0162600-01	AT2G37340.1	18674533
AT3G55460.1	Os09t0513700-01	AT2G43370.1	15987817
AT3G55460.1	Os09t0513700-01	AT2G43370.1	21798944
AT3G55460.1	Os03t0374575-01	AT3G13570.1	18674533
AT3G55460.1	Os07t0633200-02	AT3G13570.1	18674533
AT3G55460.1	Os02t0252100-02	AT3G55460.1	18674533
AT3G55460.1	Os11t0704700-01	AT3G55460.1	18674533
AT3G55460.1	Os12t0572400-01	AT3G55460.1	18674533
AT3G55460.1	Os02t0252100-02	AT3G55460.1	21798944
AT3G55460.1	Os11t0704700-01	AT3G55460.1	21798944
AT3G55460.1	Os12t0572400-01	AT3G55460.1	21798944
AT3G55460.1	Os04t0118900-01	AT3G61860.1	18674533
AT3G55460.1	Os01t0590900-01	AT4G32660.1	21798944
AT3G55460.1	Os03t0681900-01	AT5G04280.1	21798944
AT3G55460.1	Os03t0363800-01	AT5G18810.1	18674533
AT3G55460.1	Os01t0667800-01	AT5G42820.1	21798944
AT3G55460.1	Os05t0564200-01	AT5G42820.1	21798944
AT3G55460.1	Os09t0491756-01	AT5G42820.1	21798944
AT3G55460.1	Os07t0623300-01	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0572400-01	Rice	nucleus	91.7	92.4
HORVU6Hr1G061320.1	Barley	mitochondrion	44.91	84.4
TraesCS4A01G289300.1	Wheat	nucleus	79.25	78.95
HORVU4Hr1G003820.8	Barley	nucleus	79.25	78.95
TraesCS4B01G025600.1	Wheat	nucleus	79.25	78.07
HORVU7Hr1G118660.4	Barley	nucleus	66.04	77.09
TraesCS4D01G022700.1	Wheat	nucleus	78.87	76.84
HORVU4Hr1G058060.2	Barley	mitochondrion, nucleus	65.66	75.65
HORVU2Hr1G073490.2	Barley	cytosol, nucleus	43.4	68.86
GSMUA_Achr1P17340_001	Banana	nucleus	68.68	67.91
GSMUA_Achr8P34280_001	Banana	nucleus	68.68	67.66
HORVU6Hr1G034010.3	Barley	nucleus	66.42	67.18
KRH15102	Soybean	nucleus	63.77	62.36
KRH73034	Soybean	nucleus	63.02	60.51
CDY02941	Canola	nucleus	62.26	59.35
CDX76092	Canola	plastid	62.26	58.51
AT3G55460.1	Thale cress	mitochondrion, nucleus	56.6	57.25
Bra014741.1-P	Field mustard	mitochondrion, nucleus, plastid	62.26	55.93
Os03t0374575-01	Rice	nucleus	43.4	53.0
VIT_13s0019g01060.t01	Wine grape	nucleus	69.06	51.84
Os07t0633200-02	Rice	nucleus	38.87	48.36
Os03t0363800-01	Rice	nucleus	33.58	36.63
Os03t0388000-01	Rice	mitochondrion, nucleus	23.4	30.24
Os07t0623300-01	Rice	nucleus	30.19	29.09
Os08t0486200-02	Rice	nucleus	29.06	26.64
Os11t0704700-01	Rice	nucleus	50.94	26.42

Protein Annotations

MapMan:16.4.6.2	Gene3D:3.30.70.330	EntrezGene:4328900	EMBL:AK099051	ProteinID:BAD19168.1	ProteinID:BAD19762.1
ProteinID:BAF08362.1	ProteinID:BAS77916.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os02g0252100	EnsemblPlants:Os02t0252100-02	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR23147	PANTHER:PTHR23147:SF1	UniProt:Q6K542	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00003757A3	RefSeq:XP_015626888.1	SEG:seg	:

Description

Similar to SC35-like splicing factor SCL30, 30 kD. (Os02t0252100-02)

Coordinates

chr2:-:8553859..8558162

Molecular Weight (calculated)

30468.2 Da

IEP (calculated)

11.589

GRAVY (calculated)

-1.593

Length

265 amino acids

Sequence
(BLAST)

001: MRRYSPPYRS PPRRGYGGRG RSPPRRGYGG RKEQGSGSLL VRNIPLSCRA EDLRVPFERF GPVRDVYLPK DYYTGEPRGF AFVEFVDPYD ASEAQYHMNR
101: QVVFGREITV VLAAESRKRP EEMRSRARVR GYSDHEGRRS SHYGRSRSRS RSRSPRYRGR PRSRSYSPAP RRRDDYSASP QRKDTHRAKS PRRQPKEHEV
201: DKKRRSYSPA NKDGDRRDAD NGYEKRSPPA DSDGSPPHRR SPRQSSGSPP GSRSRSADGS PARSD

Best Arabidopsis Sequence Match ( AT3G55460.1 )
(BLAST)

001: MRRYSPPYYS PPRRGYGGRG RSPPPPPPRR GYGGGGGGGG RRGSSHGSLL VRNIPLDCRP EELREPFERF GPVRDVYIPR DYYSGQPRGF AFVEFVDAYD
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR

Arabidopsis Description

SCL30Serine/arginine-rich SC35-like splicing factor SCL30 [Source:UniProtKB/Swiss-Prot;Acc:Q8L3X8]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.