Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G289300.1 | Wheat | nucleus | 94.49 | 96.62 |
| TraesCS4B01G025600.1 | Wheat | nucleus | 93.75 | 94.8 |
| HORVU4Hr1G003820.8 | Barley | nucleus | 91.91 | 93.98 |
| HORVU7Hr1G118660.4 | Barley | nucleus | 77.21 | 92.51 |
| HORVU4Hr1G058060.2 | Barley | mitochondrion, nucleus | 75.74 | 89.57 |
| HORVU6Hr1G034010.3 | Barley | nucleus | 79.04 | 82.06 |
| Os02t0252100-02 | Rice | nucleus | 76.84 | 78.87 |
| HORVU2Hr1G073490.2 | Barley | cytosol, nucleus | 47.43 | 77.25 |
| TraesCS5D01G093200.1 | Wheat | nucleus, plastid | 75.0 | 68.92 |
| GSMUA_Achr8P34280_001 | Banana | nucleus | 61.76 | 62.45 |
| GSMUA_Achr1P17340_001 | Banana | nucleus | 61.4 | 62.31 |
| KRH15102 | Soybean | nucleus | 57.72 | 57.93 |
| KRH73034 | Soybean | nucleus | 57.72 | 56.88 |
| CDY02941 | Canola | nucleus | 58.09 | 56.83 |
| AT3G55460.1 | Thale cress | mitochondrion, nucleus | 54.04 | 56.11 |
| CDX76092 | Canola | plastid | 58.09 | 56.03 |
| Bra014741.1-P | Field mustard | mitochondrion, nucleus, plastid | 58.09 | 53.56 |
| TraesCS2D01G160400.1 | Wheat | nucleus | 36.76 | 48.78 |
| VIT_13s0019g01060.t01 | Wine grape | nucleus | 61.76 | 47.59 |
| TraesCS4D01G162900.1 | Wheat | nucleus | 33.09 | 37.82 |
| TraesCS2D01G169700.5 | Wheat | nucleus | 27.21 | 26.91 |
| TraesCS4D01G136700.4 | Wheat | nucleus | 50.0 | 14.99 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G022700.1 | EnsemblPlantsGene:TraesCS4D01G022700 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR23147 |
| PANTHER:PTHR23147:SF1 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| MapMan:16.4.6.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:9562420..9565616
Molecular Weight (calculated)
31146.1 Da
IEP (calculated)
11.659
GRAVY (calculated)
-1.475
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVITGKAMR RYSPQYRSPP RRGYGGRGRS PPRRGYGGRR EQGSGSLLVR NIPLSCRPED LRVPFERFGP VRDVYLPKDY YTREPRGFAF VEFVDPYDAS
101: DAQYHLNHTV FCGREITVVV ASESRKRPDD MRNRARIRGY SGEPERRHSR YGRSRSRSRS YSPRYRGRPR SRSRSYSPAP RRRDDYSASP PRSHHTQSPR
201: RLPKGHEEDE RRSYSPAGRG GGERDADTNG KRSPPSDTEG SPPRTRRSPR QSSGSPVGSR SRSPEASPAR SD
101: DAQYHLNHTV FCGREITVVV ASESRKRPDD MRNRARIRGY SGEPERRHSR YGRSRSRSRS YSPRYRGRPR SRSRSYSPAP RRRDDYSASP PRSHHTQSPR
201: RLPKGHEEDE RRSYSPAGRG GGERDADTNG KRSPPSDTEG SPPRTRRSPR QSSGSPVGSR SRSPEASPAR SD
001: MRRYSPPYYS PPRRGYGGRG RSPPPPPPRR GYGGGGGGGG RRGSSHGSLL VRNIPLDCRP EELREPFERF GPVRDVYIPR DYYSGQPRGF AFVEFVDAYD
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR
Arabidopsis Description
SCL30Serine/arginine-rich SC35-like splicing factor SCL30 [Source:UniProtKB/Swiss-Prot;Acc:Q8L3X8]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.