Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G275300.1 | Wheat | nucleus | 98.41 | 99.36 |
| HORVU5Hr1G073680.1 | Barley | nucleus | 97.78 | 98.09 |
| KXG35922 | Sorghum | nucleus | 74.92 | 82.52 |
| Zm00001d020954_P001 | Maize | nucleus | 74.29 | 81.53 |
| Os09t0491756-01 | Rice | nucleus | 73.65 | 80.0 |
| GSMUA_Achr11P... | Banana | cytosol | 49.52 | 75.73 |
| KRG89181 | Soybean | nucleus | 61.59 | 72.39 |
| GSMUA_Achr9P12340_001 | Banana | cytosol | 58.1 | 72.33 |
| VIT_18s0122g00480.t01 | Wine grape | nucleus | 62.22 | 72.06 |
| KRH49506 | Soybean | nucleus | 61.9 | 71.96 |
| TraesCS3A01G246800.1 | Wheat | nucleus | 61.27 | 69.18 |
| TraesCS1A01G397300.1 | Wheat | nucleus | 59.68 | 69.12 |
| CDX95151 | Canola | nucleus | 59.68 | 66.9 |
| AT5G42820.1 | Thale cress | nucleus | 60.0 | 66.78 |
| CDY52374 | Canola | nucleus | 60.63 | 66.78 |
| Bra027459.1-P | Field mustard | nucleus | 59.68 | 64.6 |
| AT1G27650.1 | Thale cress | nucleus | 60.32 | 64.19 |
| CDY03934 | Canola | nucleus | 48.89 | 63.11 |
| CDX90100 | Canola | nucleus | 56.83 | 62.59 |
| CDY60278 | Canola | nucleus | 47.94 | 62.14 |
| Bra010926.1-P | Field mustard | nucleus | 55.87 | 61.54 |
| CDY11775 | Canola | nucleus | 56.51 | 61.38 |
| CDY46291 | Canola | nucleus | 26.98 | 60.71 |
| Bra030057.1-P | Field mustard | nucleus | 48.57 | 59.77 |
| CDY21244 | Canola | nucleus | 29.21 | 56.1 |
| TraesCS5A01G423300.2 | Wheat | nucleus | 26.67 | 11.13 |
Protein Annotations
| MapMan:16.4.1.2.11.1 | Gene3D:3.30.70.330 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0046872 | GO:GO:0089701 | InterPro:IPR000504 |
| InterPro:IPR000571 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00642 | PRINTS:PR01848 |
| PFscan:PS50102 | PFscan:PS50103 | PANTHER:PTHR12620 | PANTHER:PTHR12620:SF13 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| InterPro:RRM_dom_euk | SMART:SM00356 | SMART:SM00360 | SMART:SM00361 | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS5A01G267500 |
| EnsemblPlants:TraesCS5A01G267500.1 | InterPro:U2AF_small | InterPro:Znf_CCCH | TIGR:cd12539 | SEG:seg | : |
Description
No Description!
Coordinates
chr5A:+:478856993..478857940
Molecular Weight (calculated)
37049.9 Da
IEP (calculated)
9.160
GRAVY (calculated)
-1.247
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNKP SVSPTLLLCN MYQRPDMITP GVDAQGNPID PVKIQGDFED FYEDIFDELS KHGEVENLHV
101: CDNLADHLIG NVYVQFREED QATKALQALQ GRFYSGRPII AEFSPVTDFR EATCRQFEEH NCNRGGYCNF MHVKEIGRDL RKRLYGHLHR SRRSHSRSSR
201: SPSPYRHHAR DRDRSSRSRD RGDYYGGSLD RGDYGDYYHH SRRSSERNRN YDSDGSRLRR RHRSRTRSPV REGSEERRAK IEQWNREREA PARQGSEERR
301: AKIEQWNRER ETAQA
101: CDNLADHLIG NVYVQFREED QATKALQALQ GRFYSGRPII AEFSPVTDFR EATCRQFEEH NCNRGGYCNF MHVKEIGRDL RKRLYGHLHR SRRSHSRSSR
201: SPSPYRHHAR DRDRSSRSRD RGDYYGGSLD RGDYGDYYHH SRRSSERNRN YDSDGSRLRR RHRSRTRSPV REGSEERRAK IEQWNREREA PARQGSEERR
301: AKIEQWNRER ETAQA
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDAQGQPLD PRKIQEHFED FFEDLFEELG KFGEIESLNI
101: CDNLADHMIG NVYVQFKEED QAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN NCNRGGYCNF MHVKLVSREL RRKLFGRYRR SYRRGSRSRS
201: RSRSISPRNK RDNDRRDPSH REFSHRDRDR EFYRHGSGKR SSERSERQER DGSRGRRQAS PKRGGSPGGG REGSEERRAR IEQWNREREE KEEGGA
101: CDNLADHMIG NVYVQFKEED QAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN NCNRGGYCNF MHVKLVSREL RRKLFGRYRR SYRRGSRSRS
201: RSRSISPRNK RDNDRRDPSH REFSHRDRDR EFYRHGSGKR SSERSERQER DGSRGRRQAS PKRGGSPGGG REGSEERRAR IEQWNREREE KEEGGA
Arabidopsis Description
U2AF35ASplicing factor U2af small subunit A [Source:UniProtKB/Swiss-Prot;Acc:Q9S709]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.