Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42820.1 | CDX75589 | AT4G36690.1 | 21798944 |
| AT5G42820.1 | CDY24773 | AT4G36690.1 | 21798944 |
| AT5G42820.1 | CDY35472 | AT4G36690.1 | 21798944 |
| AT5G42820.1 | CDY67096 | AT4G36690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95151 | Canola | nucleus | 98.25 | 100.0 |
| Bra027459.1-P | Field mustard | nucleus | 97.9 | 96.22 |
| AT5G42820.1 | Thale cress | nucleus | 92.66 | 93.64 |
| CDY21244 | Canola | nucleus | 53.15 | 92.68 |
| GSMUA_Achr11P... | Banana | cytosol | 58.74 | 81.55 |
| VIT_18s0122g00480.t01 | Wine grape | nucleus | 77.27 | 81.25 |
| Zm00001d041639_P001 | Maize | cytosol | 48.25 | 80.23 |
| GSMUA_Achr9P12340_001 | Banana | cytosol | 69.23 | 78.26 |
| KRH49506 | Soybean | nucleus | 72.73 | 76.75 |
| Os01t0667800-01 | Rice | cytosol | 54.55 | 75.36 |
| KRG89181 | Soybean | nucleus | 69.93 | 74.63 |
| CDY60278 | Canola | nucleus | 60.84 | 71.6 |
| TraesCS1A01G397300.1 | Wheat | nucleus | 67.83 | 71.32 |
| TraesCS3A01G246800.1 | Wheat | nucleus | 69.23 | 70.97 |
| CDY03934 | Canola | nucleus | 60.49 | 70.9 |
| TraesCS3B01G272500.1 | Wheat | nucleus | 69.23 | 70.46 |
| OQU87301 | Sorghum | nucleus | 70.63 | 70.14 |
| TraesCS3D01G244700.1 | Wheat | nucleus | 68.18 | 69.89 |
| CDY11775 | Canola | nucleus | 70.63 | 69.66 |
| HORVU3Hr1G061060.2 | Barley | nucleus | 68.18 | 69.39 |
| CDY46291 | Canola | nucleus | 33.92 | 69.29 |
| CDX90100 | Canola | nucleus | 69.23 | 69.23 |
| Zm00001d020954_P001 | Maize | nucleus | 68.88 | 68.64 |
| KXG35922 | Sorghum | nucleus | 68.18 | 68.18 |
| Zm00001d007784_P001 | Maize | plastid | 69.58 | 66.56 |
| TraesCS1D01G405300.3 | Wheat | nucleus | 67.83 | 66.21 |
| Os05t0564200-01 | Rice | nucleus | 70.28 | 66.12 |
| EES18681 | Sorghum | nucleus | 70.28 | 65.47 |
| Zm00001d039014_P001 | Maize | extracellular, plasma membrane, plastid | 69.93 | 65.15 |
| Zm00001d009570_P001 | Maize | nucleus, plastid | 69.23 | 65.13 |
| Os09t0491756-01 | Rice | nucleus | 65.73 | 64.83 |
| CDY21243 | Canola | cytosol | 10.84 | 64.58 |
| CDX74383 | Canola | cytosol | 12.59 | 64.29 |
| TraesCS5D01G275300.1 | Wheat | nucleus | 66.78 | 61.22 |
| HORVU5Hr1G073680.1 | Barley | nucleus | 66.78 | 60.83 |
| TraesCS5A01G267500.1 | Wheat | nucleus | 66.78 | 60.63 |
| HORVU1Hr1G087660.2 | Barley | nucleus | 67.83 | 59.69 |
| TraesCS1B01G425600.2 | Wheat | nucleus | 67.83 | 59.33 |
| CDX93437 | Canola | nucleus | 20.63 | 13.53 |
| CDY20942 | Canola | nucleus | 29.02 | 11.01 |
Protein Annotations
| MapMan:16.4.1.2.11.1 | Gene3D:3.30.70.330 | GO:A0A078ISE9 | UniProt:A0A078ISE9 | EnsemblPlants:CDY52374 | ProteinID:CDY52374 |
| ProteinID:CDY52374.1 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0046872 | GO:GO:0089701 | EnsemblPlantsGene:GSBRNA2T00006811001 | InterPro:IPR000504 |
| InterPro:IPR000571 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00642 | PRINTS:PR01848 |
| PFscan:PS50102 | PFscan:PS50103 | PANTHER:PTHR12620 | PANTHER:PTHR12620:SF27 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| InterPro:RRM_dom_euk | SMART:SM00356 | SMART:SM00361 | SUPFAM:SSF54928 | InterPro:U2AF_small | UniParc:UPI0004EF3D48 |
| InterPro:Znf_CCCH | SEG:seg | : | : | : | : |
Description
BnaA09g15730DBnaA09g15730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ISE9]
Coordinates
chrLK033081:-:31048..32470
Molecular Weight (calculated)
33346.1 Da
IEP (calculated)
9.957
GRAVY (calculated)
-1.156
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQAHFED FYEDIFEELD KFGEMESLNV
101: CDNLADHMIG NVYVLFKEED QAAAALKALQ GRFYSGRPII ADFSPVTDFR EATCRQYEED NCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSRSVSPRRK RERGDVRERG ERDRDRHGNG KRSSDRSERH DRDGGGGGRR RHGSPRRSRS PVVVREGSEE RRARIEQWNK ERDEGV
101: CDNLADHMIG NVYVLFKEED QAAAALKALQ GRFYSGRPII ADFSPVTDFR EATCRQYEED NCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSRSVSPRRK RERGDVRERG ERDRDRHGNG KRSSDRSERH DRDGGGGGRR RHGSPRRSRS PVVVREGSEE RRARIEQWNK ERDEGV
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
Arabidopsis Description
U2AF35BU2AF35B [Source:UniProtKB/TrEMBL;Acc:A0A178UM74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.