Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22065420
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d007635_P004 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42820.1 | Zm00001d007635_P004 | AT4G36690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d039014_P001 | Maize | extracellular, plasma membrane, plastid | 99.33 | 96.74 |
| EES18681 | Sorghum | nucleus | 99.0 | 96.42 |
| Zm00001d009570_P001 | Maize | nucleus, plastid | 96.99 | 95.39 |
| Zm00001d041639_P001 | Maize | cytosol | 54.52 | 94.77 |
| GSMUA_Achr11P... | Banana | cytosol | 58.19 | 84.47 |
| TraesCS1A01G397300.1 | Wheat | nucleus | 76.59 | 84.19 |
| Os05t0564200-01 | Rice | nucleus | 83.61 | 82.24 |
| GSMUA_Achr9P12340_001 | Banana | cytosol | 69.57 | 82.21 |
| TraesCS1D01G405300.3 | Wheat | nucleus | 78.26 | 79.86 |
| VIT_18s0122g00480.t01 | Wine grape | nucleus | 72.58 | 79.78 |
| HORVU1Hr1G087660.2 | Barley | nucleus | 80.27 | 73.85 |
| TraesCS1B01G425600.2 | Wheat | nucleus | 79.93 | 73.09 |
| KRH49506 | Soybean | nucleus | 66.22 | 73.06 |
| KRG89181 | Soybean | nucleus | 64.88 | 72.39 |
| Zm00001d020954_P001 | Maize | nucleus | 68.56 | 71.43 |
| AT5G42820.1 | Thale cress | nucleus | 67.22 | 71.02 |
| CDX95151 | Canola | nucleus | 66.56 | 70.82 |
| CDY52374 | Canola | nucleus | 66.56 | 69.58 |
| Bra027459.1-P | Field mustard | nucleus | 66.89 | 68.73 |
| Bra010926.1-P | Field mustard | nucleus | 64.21 | 67.13 |
| AT1G27650.1 | Thale cress | nucleus | 66.22 | 66.89 |
| CDY11775 | Canola | nucleus | 64.21 | 66.21 |
| CDY60278 | Canola | nucleus | 53.51 | 65.84 |
| CDX90100 | Canola | nucleus | 62.88 | 65.73 |
| CDY03934 | Canola | nucleus | 52.17 | 63.93 |
| CDY46291 | Canola | nucleus | 29.77 | 63.57 |
| Bra030057.1-P | Field mustard | nucleus | 52.17 | 60.94 |
| CDY21244 | Canola | nucleus | 32.11 | 58.54 |
| Zm00001d016836_P002 | Maize | nucleus | 28.09 | 11.07 |
Protein Annotations
| EntrezGene:100284238 | MapMan:16.4.1.2.11.1 | Gene3D:3.30.70.330 | UniProt:B6TRJ7 | EMBL:BT063251 | EMBL:EU967612 |
| GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0046872 | GO:GO:0089701 | InterPro:IPR000504 | InterPro:IPR000571 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:ONM27588.1 | PFAM:PF00076 | PFAM:PF00642 | PRINTS:PR01848 | PFscan:PS50102 |
| PFscan:PS50103 | PANTHER:PTHR12620 | PANTHER:PTHR12620:SF27 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk |
| SMART:SM00356 | SMART:SM00361 | SUPFAM:SSF54928 | InterPro:U2AF_small | UniParc:UPI000182DBC0 | EnsemblPlantsGene:Zm00001d007784 |
| EnsemblPlants:Zm00001d007784_P001 | EnsemblPlants:Zm00001d007784_T001 | InterPro:Znf_CCCH | SEG:seg | : | : |
Description
C3H-transcription factor 34Splicing factor U2af small subunit A
Coordinates
chr2:+:239549775..239550674
Molecular Weight (calculated)
34543.0 Da
IEP (calculated)
9.255
GRAVY (calculated)
-1.257
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLVLAN MYQRPDMITP GVDAQGQPID PEKMQEHFED FYEDIYEELG KFGEIENLNV
101: CDNLADHMIG NVYVQFREEE QAAAAYNALQ GRFYSGRPII VEYSPVTDFR EATCRQFEEN SCNRGGYCNF MHVKQIGRDL RRKLYGRSAS RRYHGRSRSR
201: SPPPQRRGHR DRDDYRGGGG GGRGRGSRYD RYDDGAGRGG RHDRYDDGAG RGGRHDRYDD GGRRRHGSPP RRARSPVRES SEERRAKIEQ WNREREGKQ
101: CDNLADHMIG NVYVQFREEE QAAAAYNALQ GRFYSGRPII VEYSPVTDFR EATCRQFEEN SCNRGGYCNF MHVKQIGRDL RRKLYGRSAS RRYHGRSRSR
201: SPPPQRRGHR DRDDYRGGGG GGRGRGSRYD RYDDGAGRGG RHDRYDDGAG RGGRHDRYDD GGRRRHGSPP RRARSPVRES SEERRAKIEQ WNREREGKQ
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
Arabidopsis Description
U2AF35BU2AF35B [Source:UniProtKB/TrEMBL;Acc:A0A178UM74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.