Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G029030.3 | |
| HORVU4Hr1G038850.14 | |
| HORVU5Hr1G089980.2 | |
| HORVU5Hr1G090000.2 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G397300.1 | Wheat | nucleus | 83.69 | 100.0 |
| TraesCS1B01G425600.2 | Wheat | nucleus | 99.08 | 98.47 |
| TraesCS1D01G405300.3 | Wheat | nucleus | 88.62 | 98.29 |
| Os05t0564200-01 | Rice | nucleus | 83.69 | 89.47 |
| Zm00001d007784_P001 | Maize | plastid | 73.85 | 80.27 |
| GSMUA_Achr9P12340_001 | Banana | cytosol | 62.46 | 80.24 |
| GSMUA_Achr11P... | Banana | cytosol | 50.77 | 80.1 |
| Zm00001d039014_P001 | Maize | extracellular, plasma membrane, plastid | 75.08 | 79.48 |
| EES18681 | Sorghum | nucleus | 74.77 | 79.15 |
| Zm00001d009570_P001 | Maize | nucleus, plastid | 73.85 | 78.95 |
| VIT_18s0122g00480.t01 | Wine grape | nucleus | 63.08 | 75.37 |
| HORVU3Hr1G061060.2 | Barley | nucleus | 63.69 | 73.67 |
| KRH49506 | Soybean | nucleus | 58.15 | 69.74 |
| AT5G42820.1 | Thale cress | nucleus | 60.62 | 69.61 |
| KRG89181 | Soybean | nucleus | 57.23 | 69.4 |
| CDX95151 | Canola | nucleus | 59.69 | 69.04 |
| CDY52374 | Canola | nucleus | 59.69 | 67.83 |
| Bra027459.1-P | Field mustard | nucleus | 60.0 | 67.01 |
| CDY60278 | Canola | nucleus | 49.23 | 65.84 |
| AT1G27650.1 | Thale cress | nucleus | 59.69 | 65.54 |
| Bra010926.1-P | Field mustard | nucleus | 57.23 | 65.03 |
| CDX90100 | Canola | nucleus | 56.31 | 63.99 |
| CDY03934 | Canola | nucleus | 47.69 | 63.52 |
| CDY11775 | Canola | nucleus | 56.62 | 63.45 |
| Bra030057.1-P | Field mustard | nucleus | 48.0 | 60.94 |
| CDY46291 | Canola | nucleus | 25.85 | 60.0 |
| HORVU5Hr1G073680.1 | Barley | nucleus | 57.85 | 59.87 |
| HORVU5Hr1G073660.1 | Barley | cytosol | 34.15 | 58.73 |
| CDY21244 | Canola | nucleus | 29.54 | 58.54 |
| HORVU5Hr1G103280.3 | Barley | cytosol | 20.62 | 12.12 |
Protein Annotations
| MapMan:16.4.1.2.11.1 | Gene3D:3.30.70.330 | EMBL:AK357220 | UniProt:F2D013 | GO:GO:0000398 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0046872 |
| GO:GO:0089701 | EnsemblPlantsGene:HORVU1Hr1G087660 | EnsemblPlants:HORVU1Hr1G087660.2 | InterPro:IPR000504 | InterPro:IPR000571 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00642 | PRINTS:PR01848 | PFscan:PS50102 | PFscan:PS50103 |
| PANTHER:PTHR12620 | PANTHER:PTHR12620:SF27 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00356 |
| SMART:SM00361 | SUPFAM:SSF54928 | InterPro:U2AF_small | UniParc:UPI00020055C1 | InterPro:Znf_CCCH | SEG:seg |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D013]
Coordinates
chrchr1H:+:539786328..539789416
Molecular Weight (calculated)
36043.7 Da
IEP (calculated)
9.370
GRAVY (calculated)
-1.167
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TTSPTIVLAN MYQRPDMITP GVDAQGVAIA PEKMQEHFED FYEDIYEELS KFGEVETLNV
101: CDNLADHMIG NVYVQFREEE QAVAAHNALQ GRFYSGRPII VEYSPVTDFR EATCRQFEEN SCNRGGYCNF MHVKQIGREL RRKLYGGRSR RSHGRSRSPS
201: PQHRRDNRDR GGDFRRDGRD EYRGGGGGGG GGGYRGGDGG GYRGGGGGGG YRGGDGGGYR GGGGGGYRGG GRGGGGGGRH DRYDDGPRRR YGGSPPRRGR
301: SPPARENSEE RRAKIEQWNR EREEK
101: CDNLADHMIG NVYVQFREEE QAVAAHNALQ GRFYSGRPII VEYSPVTDFR EATCRQFEEN SCNRGGYCNF MHVKQIGREL RRKLYGGRSR RSHGRSRSPS
201: PQHRRDNRDR GGDFRRDGRD EYRGGGGGGG GGGYRGGDGG GYRGGGGGGG YRGGDGGGYR GGGGGGYRGG GRGGGGGGRH DRYDDGPRRR YGGSPPRRGR
301: SPPARENSEE RRAKIEQWNR EREEK
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDAQGQPLD PRKIQEHFED FFEDLFEELG KFGEIESLNI
101: CDNLADHMIG NVYVQFKEED QAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN NCNRGGYCNF MHVKLVSREL RRKLFGRYRR SYRRGSRSRS
201: RSRSISPRNK RDNDRRDPSH REFSHRDRDR EFYRHGSGKR SSERSERQER DGSRGRRQAS PKRGGSPGGG REGSEERRAR IEQWNREREE KEEGGA
101: CDNLADHMIG NVYVQFKEED QAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN NCNRGGYCNF MHVKLVSREL RRKLFGRYRR SYRRGSRSRS
201: RSRSISPRNK RDNDRRDPSH REFSHRDRDR EFYRHGSGKR SSERSERQER DGSRGRRQAS PKRGGSPGGG REGSEERRAR IEQWNREREE KEEGGA
Arabidopsis Description
U2AF35ASplicing factor U2af small subunit A [Source:UniProtKB/Swiss-Prot;Acc:Q9S709]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.