CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75589
CDY24773
CDY35472
CDY67096

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42820.1	CDX75589	AT4G36690.1	21798944
AT5G42820.1	CDY24773	AT4G36690.1	21798944
AT5G42820.1	CDY35472	AT4G36690.1	21798944
AT5G42820.1	CDY67096	AT4G36690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52374	Canola	nucleus	100.0	98.25
Bra027459.1-P	Field mustard	nucleus	99.64	96.22
AT5G42820.1	Thale cress	nucleus	94.31	93.64
CDY21244	Canola	nucleus	54.09	92.68
GSMUA_Achr11P...	Banana	cytosol	59.79	81.55
VIT_18s0122g00480.t01	Wine grape	nucleus	78.65	81.25
Zm00001d041639_P001	Maize	cytosol	49.11	80.23
GSMUA_Achr9P12340_001	Banana	cytosol	70.46	78.26
KRH49506	Soybean	nucleus	73.67	76.38
Os01t0667800-01	Rice	cytosol	55.52	75.36
KRG89181	Soybean	nucleus	71.17	74.63
CDY60278	Canola	nucleus	61.92	71.6
TraesCS1A01G397300.1	Wheat	nucleus	69.04	71.32
TraesCS3A01G246800.1	Wheat	nucleus	70.46	70.97
CDY03934	Canola	nucleus	61.57	70.9
TraesCS3B01G272500.1	Wheat	nucleus	70.46	70.46
TraesCS3D01G244700.1	Wheat	nucleus	69.39	69.89
OQU87301	Sorghum	nucleus	71.53	69.79
CDY11775	Canola	nucleus	71.89	69.66
HORVU3Hr1G061060.2	Barley	nucleus	69.39	69.39
Zm00001d020954_P001	Maize	nucleus	70.11	68.64
CDY46291	Canola	nucleus	34.16	68.57
CDX90100	Canola	nucleus	69.75	68.53
KXG35922	Sorghum	nucleus	69.39	68.18
Zm00001d007784_P001	Maize	plastid	70.82	66.56
TraesCS1D01G405300.3	Wheat	nucleus	69.04	66.21
Os05t0564200-01	Rice	nucleus	71.53	66.12
EES18681	Sorghum	nucleus	71.53	65.47
Zm00001d039014_P001	Maize	extracellular, plasma membrane, plastid	71.17	65.15
Zm00001d009570_P001	Maize	nucleus, plastid	70.46	65.13
Os09t0491756-01	Rice	nucleus	66.9	64.83
CDY21243	Canola	cytosol	11.03	64.58
CDX74383	Canola	cytosol	12.81	64.29
TraesCS5D01G275300.1	Wheat	nucleus	66.9	60.26
HORVU5Hr1G073680.1	Barley	nucleus	67.26	60.19
HORVU1Hr1G087660.2	Barley	nucleus	69.04	59.69
TraesCS5A01G267500.1	Wheat	nucleus	66.9	59.68
TraesCS1B01G425600.2	Wheat	nucleus	69.04	59.33
CDX93437	Canola	nucleus	20.64	13.3
CDY20942	Canola	nucleus	29.18	10.88

Protein Annotations

MapMan:16.4.1.2.11.1	Gene3D:3.30.70.330	GO:A0A078E180	EnsemblPlants:CDX95151	ProteinID:CDX95151	ProteinID:CDX95151.1
GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0046872	GO:GO:0089701	EnsemblPlantsGene:GSBRNA2T00100710001	InterPro:IPR000504	InterPro:IPR000571
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00642	PRINTS:PR01848	PFscan:PS50102
PFscan:PS50103	PANTHER:PTHR12620	PANTHER:PTHR12620:SF27	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk
SMART:SM00356	SMART:SM00361	SUPFAM:SSF54928	InterPro:U2AF_small	UniParc:UPI0004EDD567	InterPro:Znf_CCCH
SEG:seg	:	:	:	:	:

Description

BnaC09g17190D

Coordinates

chrLK031887:+:69288..70561

Molecular Weight (calculated)

32718.4 Da

IEP (calculated)

9.958

GRAVY (calculated)

-1.119

Length

281 amino acids

Sequence
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQAHFED FYEDIFEELD KFGEMESLNV
101: CDNLADHMIG NVYVLFKEED QAAAALKALQ GRFYSGRPII ADFSPVTDFR EATCRQYEED NCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSRSVSPRRK RERGDVRDRD RHGNGKRSSD RSERHDRDGG GGGRRRHGSP RRSRSPVVVR EGSEERRARI EQWNKERDEG V

Best Arabidopsis Sequence Match ( AT5G42820.2 )
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV

Arabidopsis Description

U2AF35BU2AF35B [Source:UniProtKB/TrEMBL;Acc:A0A178UM74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.