CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019944.1-P	Field mustard	nucleus	81.42	69.34
CDY20942	Canola	nucleus	61.01	35.28
CDY21243	Canola	cytosol	3.21	29.17
CDY46291	Canola	nucleus	7.8	24.29
CDX74383	Canola	cytosol	2.98	23.21
CDX95151	Canola	nucleus	13.3	20.64
CDY52374	Canola	nucleus	13.53	20.63
CDY60278	Canola	nucleus	11.24	20.16
CDY03934	Canola	nucleus	11.01	19.67
CDX90100	Canola	nucleus	12.61	19.23
CDY11775	Canola	nucleus	12.39	18.62
CDY21244	Canola	nucleus	6.19	16.46
GSMUA_Achr11P...	Banana	extracellular	2.29	9.09

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:A0A078DWZ7	EnsemblPlants:CDX93437	ProteinID:CDX93437	ProteinID:CDX93437.1
ncoils:Coil	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	GO:GO:0089701	EnsemblPlantsGene:GSBRNA2T00156103001	InterPro:IPR000571
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00642	PRINTS:PR01848	PFscan:PS50103	PANTHER:PTHR12620
PANTHER:PTHR12620:SF4	InterPro:U2AF_small	UniParc:UPI0004EF285B	InterPro:Znf_CCCH	SEG:seg	:

Description

BnaA06g06110D

Coordinates

chrLK031876:+:193029..196248

Molecular Weight (calculated)

50925.1 Da

IEP (calculated)

8.019

GRAVY (calculated)

-1.366

Length

436 amino acids

Sequence
(BLAST)

001: MSRKEKRKAM KKMKRKEVAE KEREDAEAKL NDPAEQEKLK EIEEEEAKKR DKESKEFEDS ERAWREAMER RCKDLEASRR GPPDIIFKGN EIILRKNKVK
101: VPKKPVAAQV DVNEIVDRPT SNPLPPGIEA FSKYQNFSSA QQILDTEQDK AHCPFHLKTG ACRFGPRCSR VHFHPDKSCT ILMKNMYNGP GIAWEQEDEG
201: LEYTDEEAEH FYEEFYEDVT EFQKYGELIN FKTCSRGSAC NFIHGFLNPG GDYEWADHDK PPPRFWIRKM TALFGYSDEY VKHMEFEYSG SLTDFRSDQP
301: TDSHRQLSRR SRSRDHDHVN VGSKPCHRNS KNHCDSTRGH KLSRHEEKRH GGDESPTSTR DGSLEKEIYK ERRYAKETTR HESKWSEHSH GQRVMKKRIN
401: GRYPVDDSPD GDDDGRGETG HRRKSSKRHA GKETMP

Best Arabidopsis Sequence Match ( AT1G10320.2 )
(BLAST)

001: MEQANEKEEE ERHEEAAGEK ESFEESKEKA AEMSRKEKRK AMKKLKRKQV RKEIAAKERE EAKAKLNDPA EQERLKAIEE EDARRREKEL KDFEESERAW
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHEIS DRPTSNPLPP
201: GSEASANYQN VSSAQQILES VAQEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPN KSCTLLMKNM YNGPGITWEQ DEGLEYTDEE AELCYEEFYE
301: DVHTEFLKYG ELVNFKVCRN GSFHLKGNVY VHYRSLESAI LAYQSINGRY FAGKQVNCEF VNISRWKVAI CGEYMKSRLK TCSRGSACNF IHCFRNPGGD
401: YEWADHDRPP PRFWIHKMTS LFGYSDEKHM EHESSGSLND SISDLSTDSH RQPSRRSRSR DHDHANVGST PSYRSRKYHG DTQDSTREDK LRRHAENCHD
501: GDDSPSRDGS LEREMYKERR YAKDTLHRDS RWSEHSPGHR VGRKRIHGRY SDDDSADGDD YGRRGTGHKR KPRRGTDSGV QEQMDNEKDR KTHRSSRKHS
601: REGSSADKEE GHEHDRVHTV SDKSHRERSK HRHERSSSRY SHEEDSTESR HHQHKESDKK RSVETSPVGY QSDKDRDRSK QRQRYKSDDP ESDQSRKGKR
701: QSEENSDRET HKERRHRHRK RRRTQNSDDQ NPKESEEVEE EIERWRPV

Arabidopsis Description

Zinc finger CCCH domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.