Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42820.1 | CDX75589 | AT4G36690.1 | 21798944 |
| AT5G42820.1 | CDY24773 | AT4G36690.1 | 21798944 |
| AT5G42820.1 | CDY35472 | AT4G36690.1 | 21798944 |
| AT5G42820.1 | CDY67096 | AT4G36690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95151 | Canola | nucleus | 92.68 | 54.09 |
| CDY52374 | Canola | nucleus | 92.68 | 53.15 |
| AT5G42820.1 | Thale cress | nucleus | 90.85 | 52.65 |
| CDY03934 | Canola | nucleus | 66.46 | 44.67 |
| CDY60278 | Canola | nucleus | 65.85 | 44.44 |
| VIT_18s0122g00480.t01 | Wine grape | nucleus | 70.12 | 42.28 |
| GSMUA_Achr11P... | Banana | cytosol | 51.83 | 41.26 |
| KRH49506 | Soybean | nucleus | 64.02 | 38.75 |
| GSMUA_Achr9P12340_001 | Banana | cytosol | 57.32 | 37.15 |
| CDY11775 | Canola | nucleus | 65.24 | 36.9 |
| TraesCS3A01G246800.1 | Wheat | nucleus | 61.59 | 36.2 |
| KRG89181 | Soybean | nucleus | 58.54 | 35.82 |
| CDY46291 | Canola | nucleus | 30.49 | 35.71 |
| CDX90100 | Canola | nucleus | 62.2 | 35.66 |
| TraesCS1A01G397300.1 | Wheat | nucleus | 58.54 | 35.29 |
| TraesCS3B01G272500.1 | Wheat | nucleus | 60.37 | 35.23 |
| Zm00001d020954_P001 | Maize | nucleus | 61.59 | 35.19 |
| TraesCS3D01G244700.1 | Wheat | nucleus | 59.76 | 35.13 |
| HORVU3Hr1G061060.2 | Barley | nucleus | 59.76 | 34.88 |
| OQU87301 | Sorghum | nucleus | 59.76 | 34.03 |
| KXG35922 | Sorghum | nucleus | 59.15 | 33.92 |
| TraesCS1D01G405300.3 | Wheat | nucleus | 58.54 | 32.76 |
| Os05t0564200-01 | Rice | nucleus | 60.37 | 32.57 |
| Os09t0491756-01 | Rice | nucleus | 57.32 | 32.41 |
| Zm00001d007784_P001 | Maize | plastid | 58.54 | 32.11 |
| EES18681 | Sorghum | nucleus | 59.76 | 31.92 |
| Zm00001d039014_P001 | Maize | extracellular, plasma membrane, plastid | 59.15 | 31.6 |
| Zm00001d009570_P001 | Maize | nucleus, plastid | 58.54 | 31.58 |
| Os01t0667800-01 | Rice | cytosol | 39.63 | 31.4 |
| HORVU5Hr1G073680.1 | Barley | nucleus | 56.71 | 29.62 |
| HORVU1Hr1G087660.2 | Barley | nucleus | 58.54 | 29.54 |
| TraesCS5D01G275300.1 | Wheat | nucleus | 56.1 | 29.49 |
| TraesCS1B01G425600.2 | Wheat | nucleus | 58.54 | 29.36 |
| TraesCS5A01G267500.1 | Wheat | nucleus | 56.1 | 29.21 |
| Zm00001d041639_P001 | Maize | cytosol | 28.05 | 26.74 |
| CDY20942 | Canola | nucleus | 28.66 | 6.23 |
| CDX93437 | Canola | nucleus | 16.46 | 6.19 |
| CDX74383 | Canola | cytosol | 1.83 | 5.36 |
| CDY21243 | Canola | cytosol | 1.22 | 4.17 |
Protein Annotations
| MapMan:16.4.1.2.11.1 | Gene3D:3.30.70.330 | GO:A0A078G765 | UniProt:A0A078G765 | EnsemblPlants:CDY21244 | ProteinID:CDY21244 |
| ProteinID:CDY21244.1 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0046872 | GO:GO:0089701 | EnsemblPlantsGene:GSBRNA2T00015529001 | InterPro:IPR000571 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PRINTS:PR01848 | PFscan:PS50103 | PANTHER:PTHR12620 | PANTHER:PTHR12620:SF27 |
| InterPro:RBD_domain_sf | SUPFAM:SSF54928 | InterPro:U2AF_small | UniParc:UPI0004EE6B2C | InterPro:Znf_CCCH | SEG:seg |
Description
BnaC02g28790DBnaC02g28790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G765]
Coordinates
chrLK032118:+:198969..199751
Molecular Weight (calculated)
19509.8 Da
IEP (calculated)
11.405
GRAVY (calculated)
-1.505
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MIGNVYVLFK EEDQAAAALK ALQGRFYLGR PIIADFSPVT DFREATCRQY EEDNCNRGGY CNFMHAKQIS RELRRKLFGR YRRSYHRGSR SRSRSRSISP
101: RRKRERERGE RDVRDHDRHG KRSSDRSERH DRDGDGRRRH GSPKQSRSPV VREGSEERRA RIEQ
101: RRKRERERGE RDVRDHDRHG KRSSDRSERH DRDGDGRRRH GSPKQSRSPV VREGSEERRA RIEQ
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDAQGQPLD PRKIQEHFED FFEDLFEELG KFGEIESLNI
101: CDNLADHMIG NVYVQFKEED QAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN NCNRGGYCNF MHVKLVSREL RRKLFGRYRR SYRRGSRSRS
201: RSRSISPRNK RDNDRRDPSH REFSHRDRDR EFYRHGSGKR SSERSERQER DGSRGRRQAS PKRGGSPGGG REGSEERRAR IEQWNREREE KEEGGA
101: CDNLADHMIG NVYVQFKEED QAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN NCNRGGYCNF MHVKLVSREL RRKLFGRYRR SYRRGSRSRS
201: RSRSISPRNK RDNDRRDPSH REFSHRDRDR EFYRHGSGKR SSERSERQER DGSRGRRQAS PKRGGSPGGG REGSEERRAR IEQWNREREE KEEGGA
Arabidopsis Description
U2AF35ASplicing factor U2af small subunit A [Source:UniProtKB/Swiss-Prot;Acc:Q9S709]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.