Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY03934 | Canola | nucleus | 86.42 | 86.07 |
| Bra030057.1-P | Field mustard | nucleus | 86.42 | 82.03 |
| CDY46291 | Canola | nucleus | 39.92 | 69.29 |
| AT1G27650.1 | Thale cress | nucleus | 81.07 | 66.55 |
| CDY21244 | Canola | nucleus | 44.44 | 65.85 |
| GSMUA_Achr9P12340_001 | Banana | cytosol | 65.84 | 63.24 |
| VIT_18s0122g00480.t01 | Wine grape | nucleus | 70.37 | 62.87 |
| CDX74383 | Canola | cytosol | 14.4 | 62.5 |
| CDY21243 | Canola | cytosol | 12.35 | 62.5 |
| KRH49506 | Soybean | nucleus | 69.14 | 61.99 |
| CDX95151 | Canola | nucleus | 71.6 | 61.92 |
| CDY52374 | Canola | nucleus | 71.6 | 60.84 |
| GSMUA_Achr11P... | Banana | cytosol | 51.44 | 60.68 |
| KRG89181 | Soybean | nucleus | 65.02 | 58.96 |
| TraesCS1A01G397300.1 | Wheat | nucleus | 65.84 | 58.82 |
| CDY11775 | Canola | nucleus | 68.72 | 57.59 |
| CDX90100 | Canola | nucleus | 67.49 | 57.34 |
| Zm00001d041639_P001 | Maize | cytosol | 40.33 | 56.98 |
| TraesCS3B01G272500.1 | Wheat | nucleus | 65.84 | 56.94 |
| OQU87301 | Sorghum | nucleus | 67.08 | 56.6 |
| Zm00001d020954_P001 | Maize | nucleus | 65.43 | 55.4 |
| TraesCS3D01G244700.1 | Wheat | nucleus | 63.37 | 55.2 |
| TraesCS3A01G246800.1 | Wheat | nucleus | 63.37 | 55.2 |
| Os01t0667800-01 | Rice | cytosol | 46.91 | 55.07 |
| KXG35922 | Sorghum | nucleus | 64.61 | 54.9 |
| HORVU3Hr1G061060.2 | Barley | nucleus | 63.37 | 54.8 |
| TraesCS1D01G405300.3 | Wheat | nucleus | 65.84 | 54.61 |
| Os05t0564200-01 | Rice | nucleus | 67.49 | 53.95 |
| Os09t0491756-01 | Rice | nucleus | 64.2 | 53.79 |
| Zm00001d007784_P001 | Maize | plastid | 65.84 | 53.51 |
| EES18681 | Sorghum | nucleus | 67.08 | 53.09 |
| Zm00001d039014_P001 | Maize | extracellular, plasma membrane, plastid | 66.67 | 52.77 |
| Zm00001d009570_P001 | Maize | nucleus, plastid | 65.43 | 52.3 |
| HORVU1Hr1G087660.2 | Barley | nucleus | 65.84 | 49.23 |
| TraesCS5D01G275300.1 | Wheat | nucleus | 62.96 | 49.04 |
| TraesCS1B01G425600.2 | Wheat | nucleus | 65.84 | 48.93 |
| TraesCS5A01G267500.1 | Wheat | nucleus | 62.14 | 47.94 |
| HORVU5Hr1G073680.1 | Barley | nucleus | 61.73 | 47.77 |
| CDX93437 | Canola | nucleus | 20.16 | 11.24 |
| CDY20942 | Canola | nucleus | 25.93 | 8.36 |
Protein Annotations
| MapMan:16.4.1.2.11.1 | Gene3D:3.30.70.330 | GO:A0A078J6I5 | UniProt:A0A078J6I5 | EnsemblPlants:CDY60278 | ProteinID:CDY60278 |
| ProteinID:CDY60278.1 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0046872 | GO:GO:0089701 | EnsemblPlantsGene:GSBRNA2T00028412001 | InterPro:IPR000571 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00642 | PRINTS:PR01848 | PFscan:PS50103 | PANTHER:PTHR12620 |
| PANTHER:PTHR12620:SF27 | InterPro:RBD_domain_sf | SMART:SM00356 | SUPFAM:SSF54928 | InterPro:U2AF_small | UniParc:UPI0004EEB11C |
| InterPro:Znf_CCCH | SEG:seg | : | : | : | : |
Description
BnaA07g36590DBnaA07g36590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6I5]
Coordinates
chrLK033862:-:36309..37849
Molecular Weight (calculated)
28146.9 Da
IEP (calculated)
11.084
GRAVY (calculated)
-1.349
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GFKEEDQAAA ALQALQGRFY SGRPIIADFS PVTDFREATC
101: RQYEENNCNR GGYCNFMHVK LVSRELRRKL FGRSRRRGSG SRSRSRSRSI SPRHKREFDR RDPPRREFSH RERDSEFYRH GSGKRSSERS EKGDRDGSRR
201: RHGSPPPRRG GSPGGGREGS EERRARIEQW NREREEKEEG GGA
101: RQYEENNCNR GGYCNFMHVK LVSRELRRKL FGRSRRRGSG SRSRSRSRSI SPRHKREFDR RDPPRREFSH RERDSEFYRH GSGKRSSERS EKGDRDGSRR
201: RHGSPPPRRG GSPGGGREGS EERRARIEQW NREREEKEEG GGA
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
Arabidopsis Description
U2AF35BU2AF35B [Source:UniProtKB/TrEMBL;Acc:A0A178UM74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.