Factsheet for Bra030057.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60278	Canola	nucleus	82.03	86.42
CDY03934	Canola	nucleus	77.34	81.15
AT1G27650.1	Thale cress	nucleus	80.86	69.93
GSMUA_Achr9P12340_001	Banana	cytosol	61.72	62.45
VIT_18s0122g00480.t01	Wine grape	nucleus	65.23	61.4
GSMUA_Achr11P...	Banana	cytosol	48.83	60.68
KRG89181	Soybean	nucleus	62.89	60.07
Bra010926.1-P	Field mustard	nucleus	66.41	59.44
KRH49506	Soybean	nucleus	62.5	59.04
Bra027459.1-P	Field mustard	nucleus	66.8	58.76
TraesCS1A01G397300.1	Wheat	nucleus	60.94	57.35
Zm00001d041639_P001	Maize	cytosol	38.28	56.98
TraesCS3D01G244700.1	Wheat	nucleus	61.33	56.27
TraesCS3B01G272500.1	Wheat	nucleus	61.72	56.23
TraesCS3A01G246800.1	Wheat	nucleus	60.94	55.91
HORVU3Hr1G061060.2	Barley	nucleus	61.33	55.87
Zm00001d020954_P001	Maize	nucleus	62.5	55.75
OQU87301	Sorghum	nucleus	62.5	55.56
KXG35922	Sorghum	nucleus	61.72	55.24
Os01t0667800-01	Rice	cytosol	44.53	55.07
Os09t0491756-01	Rice	nucleus	61.33	54.14
TraesCS1D01G405300.3	Wheat	nucleus	60.94	53.24
Os05t0564200-01	Rice	nucleus	62.5	52.63
Zm00001d007784_P001	Maize	plastid	60.94	52.17
EES18681	Sorghum	nucleus	62.5	52.12
Zm00001d009570_P001	Maize	nucleus, plastid	61.33	51.64
Zm00001d039014_P001	Maize	extracellular, plasma membrane, plastid	61.72	51.47
TraesCS5D01G275300.1	Wheat	nucleus	60.55	49.68
HORVU5Hr1G073680.1	Barley	nucleus	59.77	48.73
TraesCS5A01G267500.1	Wheat	nucleus	59.77	48.57
HORVU1Hr1G087660.2	Barley	nucleus	60.94	48.0
TraesCS1B01G425600.2	Wheat	nucleus	60.94	47.71
Bra019944.1-P	Field mustard	nucleus	21.48	10.74
Bra018446.1-P	Field mustard	nucleus	25.78	8.84

Protein Annotations

MapMan:16.4.1.2.11.1	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra030057	EnsemblPlants:Bra030057.1	EnsemblPlants:Bra030057.1-P	GO:GO:0000003
GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987	GO:GO:0046872	GO:GO:0048573
GO:GO:0089701	InterPro:IPR000571	InterPro:IPR012677	UniProt:M4EMN7	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00642
PRINTS:PR01848	PFscan:PS50103	PANTHER:PTHR12620	PANTHER:PTHR12620:SF27	InterPro:RBD_domain_sf	SMART:SM00356
SUPFAM:SSF54928	InterPro:U2AF_small	UniParc:UPI0002541140	InterPro:Znf_CCCH	SEG:seg	:

Description

AT1G27650 (E=2e-042) ATU2AF35A | ATU2AF35A; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding

Coordinates

chrA07:-:6920660..6921743

Molecular Weight (calculated)

29538.6 Da

IEP (calculated)

11.182

GRAVY (calculated)

-1.208

Length

256 amino acids

Sequence
(BLAST)

001: MLSLSSLRVS VFAMAEHLAS IFGTEKDRVN CPFYFKIGAC RHGDRCSRLH NRPTISPTLL LSNMYQRPDM ITPGFKEEDQ AAAALQALQG RFYSGRPIIA
101: DFSPVTDFRE ATCRQYEENN CNRGGYCNFM HVKLVSRELR RKLFGRSRRR GSGSRSRSRS RSISPRHKRE FDRRDPPRRE FSHRERDSEF YRHGSGKRSS
201: ERSEKGDRDG SRRRHGSPPP RRGGSPGGGR EGSEERRARI EQWNREREEK EEGGGA

Best Arabidopsis Sequence Match ( AT1G27650.1 )
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDAQGQPLD PRKIQEHFED FFEDLFEELG KFGEIESLNI
101: CDNLADHMIG NVYVQFKEED QAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN NCNRGGYCNF MHVKLVSREL RRKLFGRYRR SYRRGSRSRS
201: RSRSISPRNK RDNDRRDPSH REFSHRDRDR EFYRHGSGKR SSERSERQER DGSRGRRQAS PKRGGSPGGG REGSEERRAR IEQWNREREE KEEGGA

Arabidopsis Description

U2AF35ASplicing factor U2af small subunit A [Source:UniProtKB/Swiss-Prot;Acc:Q9S709]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.