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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY20942 Canola nucleus 68.81 68.17
KRH13511 Soybean nucleus 30.66 55.99
Bra019944.1-P Field mustard nucleus 37.35 54.49
AT1G10320.1 Thale cress nucleus 53.01 52.31
KRH43656 Soybean nucleus 34.54 43.07
HORVU5Hr1G103280.3 Barley cytosol 30.52 41.23
PGSC0003DMT400053361 Potato nucleus 38.55 37.84
TraesCS5D01G431900.1 Wheat nucleus 37.75 37.8
TraesCS5B01G425300.2 Wheat nucleus 36.81 36.57
Zm00001d016836_P002 Maize nucleus 37.08 36.5
TraesCS5A01G423300.2 Wheat nucleus 36.28 35.89
Solyc01g103090.2.1 Tomato nucleus 37.62 35.8
GSMUA_Achr6P12770_001 Banana nucleus 39.49 35.37
OQU85120 Sorghum nucleus, plastid 35.21 34.29
VIT_12s0035g01790.t01 Wine grape nucleus 38.69 32.69
Bra010926.1-P Field mustard nucleus 11.24 29.37
Bra027459.1-P Field mustard nucleus 11.38 29.21
Os02t0557500-01 Rice cytosol, nucleus 15.8 28.71
Bra030057.1-P Field mustard nucleus 8.84 25.78
Protein Annotations
MapMan:16.4.4.3Gene3D:3.30.70.330EnsemblPlantsGene:Bra018446EnsemblPlants:Bra018446.1EnsemblPlants:Bra018446.1-Pncoils:Coil
GO:GO:0000398GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0046872GO:GO:0089701InterPro:IPR000504InterPro:IPR000571InterPro:IPR012677
UniProt:M4DPK5InterPro:Nucleotide-bd_a/b_plait_sfPFAM:PF00642PRINTS:PR01848PFscan:PS50102PFscan:PS50103
PANTHER:PTHR12620PANTHER:PTHR12620:SF4InterPro:RBD_domain_sfInterPro:RRM_domInterPro:RRM_dom_eukSMART:SM00356
SMART:SM00361SUPFAM:SSF54928InterPro:U2AF_smallUniParc:UPI0002547F47InterPro:Znf_CCCHSEG:seg
Description
AT1G10320 (E=4e-210) | U2 snRNP auxiliary factor-related
Coordinates
chrA05:+:8256914..8260777
Molecular Weight (calculated)
87745.7 Da
IEP (calculated)
8.036
GRAVY (calculated)
-1.587
Length
747 amino acids
Sequence
(BLAST)
001: MEPQNEKPEE GGRLEEAMGG LEESKDKSAE MSRKEKRKAM KKLKRKQVRK EIASKEREDA EAKLNDPAEQ EKLKAIEEEE ARKREKELRE FEESERAWRE
101: AMEIKRKKEE EEERRWKEIE ELRKLEASRD GECGEDGEYE YIEEGPPEII FKGNEIILRK NKVRVPKKSV PQVEGNEIAD RPTSNPLPPG TEALSKYHNV
201: SSAQQILDSV AQEVPNFGTE QDKAHCPFHL KTGACRFGPR CSRVHFYPDK SCTILMKNMY NGPGIAWEQD EGLEYTDEEA EHCYEEFYED VHTEFLKYGE
301: LINFKVCRNG SFHLKGNVYV HYRSLESAML AYQSINGRYF AGKQVNCEFV NISRWKVAIC GEYMKSRLKT CSRGSSCNFI HCFRNPGGDY EWADYDKPPP
401: RFWIRKMTSL FGYSDEYLKH MEREYSGSLS EFRSDQPTDL QRQPSRRSRS RDHDHVNVGS KPSYRSRTRD SSRGHKHSRH EENCHGGDES PSSTRDGSVE
501: RETYKEPRYA KETSRHESKW SEHSPRHRVM RKRIYEKYSD DDSGVEDGRG ETSHKRKSSR RYGKRGSDSE VQEGLDDEEN TRTHWSSSDR RSRKEDDREG
601: SSADHKEKSH GHDRVHEVGE KSRRERSSSR YSHEGDSSES KHRPHKGSGE NERKRSVETS PRDKDRDKSK ERHRYNKTGD PDSDRSRKGK QGRESQEVKR
701: NASGSSSDEE REERRKERSH SSHRKRRRSD EQTRKEPEEE IERWRPM
Best Arabidopsis Sequence Match ( AT1G10320.2 )
(BLAST)
001: MEQANEKEEE ERHEEAAGEK ESFEESKEKA AEMSRKEKRK AMKKLKRKQV RKEIAAKERE EAKAKLNDPA EQERLKAIEE EDARRREKEL KDFEESERAW
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHEIS DRPTSNPLPP
201: GSEASANYQN VSSAQQILES VAQEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPN KSCTLLMKNM YNGPGITWEQ DEGLEYTDEE AELCYEEFYE
301: DVHTEFLKYG ELVNFKVCRN GSFHLKGNVY VHYRSLESAI LAYQSINGRY FAGKQVNCEF VNISRWKVAI CGEYMKSRLK TCSRGSACNF IHCFRNPGGD
401: YEWADHDRPP PRFWIHKMTS LFGYSDEKHM EHESSGSLND SISDLSTDSH RQPSRRSRSR DHDHANVGST PSYRSRKYHG DTQDSTREDK LRRHAENCHD
501: GDDSPSRDGS LEREMYKERR YAKDTLHRDS RWSEHSPGHR VGRKRIHGRY SDDDSADGDD YGRRGTGHKR KPRRGTDSGV QEQMDNEKDR KTHRSSRKHS
601: REGSSADKEE GHEHDRVHTV SDKSHRERSK HRHERSSSRY SHEEDSTESR HHQHKESDKK RSVETSPVGY QSDKDRDRSK QRQRYKSDDP ESDQSRKGKR
701: QSEENSDRET HKERRHRHRK RRRTQNSDDQ NPKESEEVEE EIERWRPV
Arabidopsis Description
Zinc finger CCCH domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY74]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.