Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY20942 | Canola | nucleus | 68.81 | 68.17 |
KRH13511 | Soybean | nucleus | 30.66 | 55.99 |
Bra019944.1-P | Field mustard | nucleus | 37.35 | 54.49 |
AT1G10320.1 | Thale cress | nucleus | 53.01 | 52.31 |
KRH43656 | Soybean | nucleus | 34.54 | 43.07 |
HORVU5Hr1G103280.3 | Barley | cytosol | 30.52 | 41.23 |
PGSC0003DMT400053361 | Potato | nucleus | 38.55 | 37.84 |
TraesCS5D01G431900.1 | Wheat | nucleus | 37.75 | 37.8 |
TraesCS5B01G425300.2 | Wheat | nucleus | 36.81 | 36.57 |
Zm00001d016836_P002 | Maize | nucleus | 37.08 | 36.5 |
TraesCS5A01G423300.2 | Wheat | nucleus | 36.28 | 35.89 |
Solyc01g103090.2.1 | Tomato | nucleus | 37.62 | 35.8 |
GSMUA_Achr6P12770_001 | Banana | nucleus | 39.49 | 35.37 |
OQU85120 | Sorghum | nucleus, plastid | 35.21 | 34.29 |
VIT_12s0035g01790.t01 | Wine grape | nucleus | 38.69 | 32.69 |
Bra010926.1-P | Field mustard | nucleus | 11.24 | 29.37 |
Bra027459.1-P | Field mustard | nucleus | 11.38 | 29.21 |
Os02t0557500-01 | Rice | cytosol, nucleus | 15.8 | 28.71 |
Bra030057.1-P | Field mustard | nucleus | 8.84 | 25.78 |
Protein Annotations
MapMan:16.4.4.3 | Gene3D:3.30.70.330 | EnsemblPlantsGene:Bra018446 | EnsemblPlants:Bra018446.1 | EnsemblPlants:Bra018446.1-P | ncoils:Coil |
GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009987 | GO:GO:0046872 | GO:GO:0089701 | InterPro:IPR000504 | InterPro:IPR000571 | InterPro:IPR012677 |
UniProt:M4DPK5 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00642 | PRINTS:PR01848 | PFscan:PS50102 | PFscan:PS50103 |
PANTHER:PTHR12620 | PANTHER:PTHR12620:SF4 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00356 |
SMART:SM00361 | SUPFAM:SSF54928 | InterPro:U2AF_small | UniParc:UPI0002547F47 | InterPro:Znf_CCCH | SEG:seg |
Description
AT1G10320 (E=4e-210) | U2 snRNP auxiliary factor-related
Coordinates
chrA05:+:8256914..8260777
Molecular Weight (calculated)
87745.7 Da
IEP (calculated)
8.036
GRAVY (calculated)
-1.587
Length
747 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPQNEKPEE GGRLEEAMGG LEESKDKSAE MSRKEKRKAM KKLKRKQVRK EIASKEREDA EAKLNDPAEQ EKLKAIEEEE ARKREKELRE FEESERAWRE
101: AMEIKRKKEE EEERRWKEIE ELRKLEASRD GECGEDGEYE YIEEGPPEII FKGNEIILRK NKVRVPKKSV PQVEGNEIAD RPTSNPLPPG TEALSKYHNV
201: SSAQQILDSV AQEVPNFGTE QDKAHCPFHL KTGACRFGPR CSRVHFYPDK SCTILMKNMY NGPGIAWEQD EGLEYTDEEA EHCYEEFYED VHTEFLKYGE
301: LINFKVCRNG SFHLKGNVYV HYRSLESAML AYQSINGRYF AGKQVNCEFV NISRWKVAIC GEYMKSRLKT CSRGSSCNFI HCFRNPGGDY EWADYDKPPP
401: RFWIRKMTSL FGYSDEYLKH MEREYSGSLS EFRSDQPTDL QRQPSRRSRS RDHDHVNVGS KPSYRSRTRD SSRGHKHSRH EENCHGGDES PSSTRDGSVE
501: RETYKEPRYA KETSRHESKW SEHSPRHRVM RKRIYEKYSD DDSGVEDGRG ETSHKRKSSR RYGKRGSDSE VQEGLDDEEN TRTHWSSSDR RSRKEDDREG
601: SSADHKEKSH GHDRVHEVGE KSRRERSSSR YSHEGDSSES KHRPHKGSGE NERKRSVETS PRDKDRDKSK ERHRYNKTGD PDSDRSRKGK QGRESQEVKR
701: NASGSSSDEE REERRKERSH SSHRKRRRSD EQTRKEPEEE IERWRPM
101: AMEIKRKKEE EEERRWKEIE ELRKLEASRD GECGEDGEYE YIEEGPPEII FKGNEIILRK NKVRVPKKSV PQVEGNEIAD RPTSNPLPPG TEALSKYHNV
201: SSAQQILDSV AQEVPNFGTE QDKAHCPFHL KTGACRFGPR CSRVHFYPDK SCTILMKNMY NGPGIAWEQD EGLEYTDEEA EHCYEEFYED VHTEFLKYGE
301: LINFKVCRNG SFHLKGNVYV HYRSLESAML AYQSINGRYF AGKQVNCEFV NISRWKVAIC GEYMKSRLKT CSRGSSCNFI HCFRNPGGDY EWADYDKPPP
401: RFWIRKMTSL FGYSDEYLKH MEREYSGSLS EFRSDQPTDL QRQPSRRSRS RDHDHVNVGS KPSYRSRTRD SSRGHKHSRH EENCHGGDES PSSTRDGSVE
501: RETYKEPRYA KETSRHESKW SEHSPRHRVM RKRIYEKYSD DDSGVEDGRG ETSHKRKSSR RYGKRGSDSE VQEGLDDEEN TRTHWSSSDR RSRKEDDREG
601: SSADHKEKSH GHDRVHEVGE KSRRERSSSR YSHEGDSSES KHRPHKGSGE NERKRSVETS PRDKDRDKSK ERHRYNKTGD PDSDRSRKGK QGRESQEVKR
701: NASGSSSDEE REERRKERSH SSHRKRRRSD EQTRKEPEEE IERWRPM
001: MEQANEKEEE ERHEEAAGEK ESFEESKEKA AEMSRKEKRK AMKKLKRKQV RKEIAAKERE EAKAKLNDPA EQERLKAIEE EDARRREKEL KDFEESERAW
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHEIS DRPTSNPLPP
201: GSEASANYQN VSSAQQILES VAQEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPN KSCTLLMKNM YNGPGITWEQ DEGLEYTDEE AELCYEEFYE
301: DVHTEFLKYG ELVNFKVCRN GSFHLKGNVY VHYRSLESAI LAYQSINGRY FAGKQVNCEF VNISRWKVAI CGEYMKSRLK TCSRGSACNF IHCFRNPGGD
401: YEWADHDRPP PRFWIHKMTS LFGYSDEKHM EHESSGSLND SISDLSTDSH RQPSRRSRSR DHDHANVGST PSYRSRKYHG DTQDSTREDK LRRHAENCHD
501: GDDSPSRDGS LEREMYKERR YAKDTLHRDS RWSEHSPGHR VGRKRIHGRY SDDDSADGDD YGRRGTGHKR KPRRGTDSGV QEQMDNEKDR KTHRSSRKHS
601: REGSSADKEE GHEHDRVHTV SDKSHRERSK HRHERSSSRY SHEEDSTESR HHQHKESDKK RSVETSPVGY QSDKDRDRSK QRQRYKSDDP ESDQSRKGKR
701: QSEENSDRET HKERRHRHRK RRRTQNSDDQ NPKESEEVEE EIERWRPV
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHEIS DRPTSNPLPP
201: GSEASANYQN VSSAQQILES VAQEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPN KSCTLLMKNM YNGPGITWEQ DEGLEYTDEE AELCYEEFYE
301: DVHTEFLKYG ELVNFKVCRN GSFHLKGNVY VHYRSLESAI LAYQSINGRY FAGKQVNCEF VNISRWKVAI CGEYMKSRLK TCSRGSACNF IHCFRNPGGD
401: YEWADHDRPP PRFWIHKMTS LFGYSDEKHM EHESSGSLND SISDLSTDSH RQPSRRSRSR DHDHANVGST PSYRSRKYHG DTQDSTREDK LRRHAENCHD
501: GDDSPSRDGS LEREMYKERR YAKDTLHRDS RWSEHSPGHR VGRKRIHGRY SDDDSADGDD YGRRGTGHKR KPRRGTDSGV QEQMDNEKDR KTHRSSRKHS
601: REGSSADKEE GHEHDRVHTV SDKSHRERSK HRHERSSSRY SHEEDSTESR HHQHKESDKK RSVETSPVGY QSDKDRDRSK QRQRYKSDDP ESDQSRKGKR
701: QSEENSDRET HKERRHRHRK RRRTQNSDDQ NPKESEEVEE EIERWRPV
Arabidopsis Description
Zinc finger CCCH domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.