Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G423300.2 | Wheat | nucleus | 79.39 | 79.07 |
| TraesCS5D01G431900.1 | Wheat | nucleus | 78.06 | 78.69 |
| HORVU5Hr1G103280.3 | Barley | cytosol | 52.39 | 71.25 |
| KRH13511 | Soybean | nucleus | 30.32 | 55.75 |
| Zm00001d016836_P002 | Maize | nucleus | 51.2 | 50.72 |
| OQU85120 | Sorghum | nucleus, plastid | 49.2 | 48.24 |
| Os02t0557500-01 | Rice | cytosol, nucleus | 23.8 | 43.55 |
| KRH43656 | Soybean | nucleus | 33.51 | 42.07 |
| Bra018446.1-P | Field mustard | nucleus | 36.57 | 36.81 |
| PGSC0003DMT400053361 | Potato | nucleus | 37.1 | 36.66 |
| CDY20942 | Canola | nucleus | 36.17 | 36.07 |
| GSMUA_Achr6P12770_001 | Banana | nucleus | 39.63 | 35.73 |
| Solyc01g103090.2.1 | Tomato | nucleus | 35.9 | 34.39 |
| AT1G10320.1 | Thale cress | nucleus | 34.44 | 34.21 |
| VIT_12s0035g01790.t01 | Wine grape | nucleus | 35.77 | 30.43 |
| TraesCS3B01G272500.1 | Wheat | nucleus | 11.04 | 29.54 |
| TraesCS1B01G425600.2 | Wheat | nucleus | 10.77 | 24.77 |
Protein Annotations
| MapMan:16.4.4.3 | Gene3D:3.30.70.330 | ncoils:Coil | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0046872 | GO:GO:0089701 |
| InterPro:IPR000504 | InterPro:IPR000571 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00642 | PRINTS:PR01848 |
| PFscan:PS50102 | PFscan:PS50103 | PANTHER:PTHR12620 | PANTHER:PTHR12620:SF4 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| InterPro:RRM_dom_euk | SMART:SM00356 | SMART:SM00361 | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS5B01G425300 | EnsemblPlants:TraesCS5B01G425300.2 |
| InterPro:U2AF_small | InterPro:Znf_CCCH | TIGR:cd12540 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5B:+:601330655..601336671
Molecular Weight (calculated)
85412.5 Da
IEP (calculated)
8.227
GRAVY (calculated)
-1.290
Length
752 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTAAGDLPA ASTRSERRKE RKKERRRRAR REAAAAARAA AEALAADPEE GRRLRELEEA EAAASDRARR AFEDAERRWL EKAASRAAEE AAAEEEARAA
101: EASARDKYND DHRDETEDDG EWEYIEDGPA EIIWQGNEII VKKKKIKIPK KAEDKPLSQE EERPTSNPLP PQSVAVASQR REPSLSAREL LEKVAQETPN
201: FGTEQDKAHC PFYLKTAACR FGVRCSRVHF YPDKSCTLLM KNMYNGPGLV LEQDEGLEFT DEEIEQSYEE FYEDVHTEFL KFGELVNFKV CRNGSFHLRG
301: NVYVHYKALD SALLAYNSMN GRYFAGKQIT CEFVALTKWK SAICGEYMRS RFKTCSHGVA CNFIHCFRNP GGDYEWADWD NPPPKYWTRK MAALFGPSDD
401: AVFDKASDTP DFERLHSSDR KRLRSSDDRY ISSRHGDGGA HKRHSSRVFS HSKQEQSNHI MKHGHTRHRR EASAANEQRG QEIEDDTGRY CSPMENERVS
501: QAHKHEEKHR DGHGDVARGY NGKIKSRKHR SERHESLESG CSDWPSEFAD AGTSRSPSGS KSTNRYNDHK RNRRQSSDDP NLERGYSAAD KSSGKAHIAK
601: SSSRHYVEDD SCGEKGSGRG KSGKHSDHCD DPDDRWLATN SDVDSDAETR FPRSSSGVGK GGRNDNAPPD EDDRYRRSSS RSGRSRAKDD KSSRKRKKRH
701: SEIRKNSDSD DDPSDSSDVR DLSLHARRSR SRSSEEGLSL HKRRKGRRGH DS
101: EASARDKYND DHRDETEDDG EWEYIEDGPA EIIWQGNEII VKKKKIKIPK KAEDKPLSQE EERPTSNPLP PQSVAVASQR REPSLSAREL LEKVAQETPN
201: FGTEQDKAHC PFYLKTAACR FGVRCSRVHF YPDKSCTLLM KNMYNGPGLV LEQDEGLEFT DEEIEQSYEE FYEDVHTEFL KFGELVNFKV CRNGSFHLRG
301: NVYVHYKALD SALLAYNSMN GRYFAGKQIT CEFVALTKWK SAICGEYMRS RFKTCSHGVA CNFIHCFRNP GGDYEWADWD NPPPKYWTRK MAALFGPSDD
401: AVFDKASDTP DFERLHSSDR KRLRSSDDRY ISSRHGDGGA HKRHSSRVFS HSKQEQSNHI MKHGHTRHRR EASAANEQRG QEIEDDTGRY CSPMENERVS
501: QAHKHEEKHR DGHGDVARGY NGKIKSRKHR SERHESLESG CSDWPSEFAD AGTSRSPSGS KSTNRYNDHK RNRRQSSDDP NLERGYSAAD KSSGKAHIAK
601: SSSRHYVEDD SCGEKGSGRG KSGKHSDHCD DPDDRWLATN SDVDSDAETR FPRSSSGVGK GGRNDNAPPD EDDRYRRSSS RSGRSRAKDD KSSRKRKKRH
701: SEIRKNSDSD DDPSDSSDVR DLSLHARRSR SRSSEEGLSL HKRRKGRRGH DS
001: MEQANEKEEE ERHEEAAGEK ESFEESKEKA AEMSRKEKRK AMKKLKRKQV RKEIAAKERE EAKAKLNDPA EQERLKAIEE EDARRREKEL KDFEESERAW
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHEIS DRPTSNPLPP
201: GSEASANYQN VSSAQQILES VAQEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPN KSCTLLMKNM YNGPGITWEQ DEGLEYTDEE AELCYEEFYE
301: DVHTEFLKYG ELVNFKVCRN GSFHLKGNVY VHYRSLESAI LAYQSINGRY FAGKQVNCEF VNISRWKVAI CGEYMKSRLK TCSRGSACNF IHCFRNPGGD
401: YEWADHDRPP PRFWIHKMTS LFGYSDEKHM EHESSGSLND SISDLSTDSH RQPSRRSRSR DHDHANVGST PSYRSRKYHG DTQDSTREDK LRRHAENCHD
501: GDDSPSRDGS LEREMYKERR YAKDTLHRDS RWSEHSPGHR VGRKRIHGRY SDDDSADGDD YGRRGTGHKR KPRRGTDSGV QEQMDNEKDR KTHRSSRKHS
601: REGSSADKEE GHEHDRVHTV SDKSHRERSK HRHERSSSRY SHEEDSTESR HHQHKESDKK RSVETSPVGY QSDKDRDRSK QRQRYKSDDP ESDQSRKGKR
701: QSEENSDRET HKERRHRHRK RRRTQNSDDQ NPKESEEVEE EIERWRPV
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHEIS DRPTSNPLPP
201: GSEASANYQN VSSAQQILES VAQEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPN KSCTLLMKNM YNGPGITWEQ DEGLEYTDEE AELCYEEFYE
301: DVHTEFLKYG ELVNFKVCRN GSFHLKGNVY VHYRSLESAI LAYQSINGRY FAGKQVNCEF VNISRWKVAI CGEYMKSRLK TCSRGSACNF IHCFRNPGGD
401: YEWADHDRPP PRFWIHKMTS LFGYSDEKHM EHESSGSLND SISDLSTDSH RQPSRRSRSR DHDHANVGST PSYRSRKYHG DTQDSTREDK LRRHAENCHD
501: GDDSPSRDGS LEREMYKERR YAKDTLHRDS RWSEHSPGHR VGRKRIHGRY SDDDSADGDD YGRRGTGHKR KPRRGTDSGV QEQMDNEKDR KTHRSSRKHS
601: REGSSADKEE GHEHDRVHTV SDKSHRERSK HRHERSSSRY SHEEDSTESR HHQHKESDKK RSVETSPVGY QSDKDRDRSK QRQRYKSDDP ESDQSRKGKR
701: QSEENSDRET HKERRHRHRK RRRTQNSDDQ NPKESEEVEE EIERWRPV
Arabidopsis Description
Zinc finger CCCH domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.