Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400053361 | Potato | nucleus | 70.7 | 72.93 |
| KRH13511 | Soybean | nucleus | 29.68 | 56.97 |
| HORVU5Hr1G103280.3 | Barley | cytosol | 30.32 | 43.04 |
| KRH43656 | Soybean | nucleus | 31.46 | 41.24 |
| CDY20942 | Canola | nucleus | 36.82 | 38.33 |
| AT1G10320.1 | Thale cress | nucleus | 36.82 | 38.18 |
| Bra018446.1-P | Field mustard | nucleus | 35.8 | 37.62 |
| GSMUA_Achr6P12770_001 | Banana | nucleus | 39.11 | 36.81 |
| TraesCS5D01G431900.1 | Wheat | nucleus | 34.52 | 36.33 |
| TraesCS5B01G425300.2 | Wheat | nucleus | 34.39 | 35.9 |
| TraesCS5A01G423300.2 | Wheat | nucleus | 34.27 | 35.63 |
| OQU85120 | Sorghum | nucleus, plastid | 33.63 | 34.42 |
| Zm00001d016836_P002 | Maize | nucleus | 32.74 | 33.86 |
| VIT_12s0035g01790.t01 | Wine grape | nucleus | 37.96 | 33.71 |
| Solyc11g066830.1.1 | Tomato | nucleus | 10.45 | 26.54 |
| Os02t0557500-01 | Rice | cytosol, nucleus | 12.87 | 24.57 |
| Solyc10g083640.1.1 | Tomato | nucleus | 10.83 | 24.29 |
Protein Annotations
| MapMan:16.4.4.3 | Gene3D:3.30.70.330 | ncoils:Coil | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005681 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0030628 |
| GO:GO:0046872 | GO:GO:0089701 | InterPro:IPR000504 | InterPro:IPR000571 | InterPro:IPR012677 | UniProt:K4B1N5 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00642 | PRINTS:PR01848 | PFscan:PS50102 | PFscan:PS50103 |
| PANTHER:PTHR12620 | PANTHER:PTHR12620:SF4 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00356 | SUPFAM:SSF54928 |
| EnsemblPlantsGene:Solyc01g103090.2 | EnsemblPlants:Solyc01g103090.2.1 | InterPro:U2AF_small | UniParc:UPI0002768043 | InterPro:Znf_CCCH | SEG:seg |
Description
No Description!
Coordinates
chr1:-:91755837..91764105
Molecular Weight (calculated)
91645.0 Da
IEP (calculated)
7.577
GRAVY (calculated)
-1.451
Length
785 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEPISVEED DKQATGLQRR VEPISSSSAE VQICNNRKEK RKLTKKEKRK QKRKELAEKT RQEEEAKLND PEELRRIQLE EEEEKERLER ERREFEERER
101: LFLEALARKE AQEVEEEERR RVEDEEEKAK QSQVALENEP DEDVEWEYVE DGPPEIIWQG NEIIVKRNKV KVKKKDQDPV IVKEDPNRPT SNPLAPQSEV
201: YADYKNASSL SAQQLLENVA VQTPNFGTEQ DKAHCPFHLK TGACRFGSRC SRVHFYPDKS CTLLMKNMYC GPGFAWEQDE GLEYTDEEVE CSFEEFYEDV
301: HTEFLKFGEI INFKVCRNSS SHLRGNVYVH YKDIDSAVLA YHSINGRYFA SKQITCEFVS VTKWKVAICG EFVKSKLKSC SRGTACNFIH CFRNPGGDYE
401: WADLDKPPPR YWLTKMAALF GYADESVYDR RLEQKNSKRM LNSYKTLASD SDRHRYDSRE RRSRSRESRS SRIHYDDYDF HKRIHQERGD RTDKKQRKIL
501: DKKQFEEGTG QHEEETNQHG KNRYHSSDSD WDLSDREKEG VKRHHSTGRK SRNHHNEKMG LQHRNDHIKK RVSGSDSGDD LLEKKRYGDA GSGNSEKGSR
601: HSKEDRNTDS SSEWLDEKRD RSSRHKKRRS SSRRHNGVPS SPDRWDKNSG SHDNNTTGDW TAAITDKRKP SSDKRVHSDR DHPYHHNEDI GERGRWEPDE
701: GATGTHSKSS KKSVIDDSED HNVESELNDD GDYSGGTTRG SSRSINRKRR GNSDRMDSAK KSKRYKENDR AHNGKDRSYT GHLSS
101: LFLEALARKE AQEVEEEERR RVEDEEEKAK QSQVALENEP DEDVEWEYVE DGPPEIIWQG NEIIVKRNKV KVKKKDQDPV IVKEDPNRPT SNPLAPQSEV
201: YADYKNASSL SAQQLLENVA VQTPNFGTEQ DKAHCPFHLK TGACRFGSRC SRVHFYPDKS CTLLMKNMYC GPGFAWEQDE GLEYTDEEVE CSFEEFYEDV
301: HTEFLKFGEI INFKVCRNSS SHLRGNVYVH YKDIDSAVLA YHSINGRYFA SKQITCEFVS VTKWKVAICG EFVKSKLKSC SRGTACNFIH CFRNPGGDYE
401: WADLDKPPPR YWLTKMAALF GYADESVYDR RLEQKNSKRM LNSYKTLASD SDRHRYDSRE RRSRSRESRS SRIHYDDYDF HKRIHQERGD RTDKKQRKIL
501: DKKQFEEGTG QHEEETNQHG KNRYHSSDSD WDLSDREKEG VKRHHSTGRK SRNHHNEKMG LQHRNDHIKK RVSGSDSGDD LLEKKRYGDA GSGNSEKGSR
601: HSKEDRNTDS SSEWLDEKRD RSSRHKKRRS SSRRHNGVPS SPDRWDKNSG SHDNNTTGDW TAAITDKRKP SSDKRVHSDR DHPYHHNEDI GERGRWEPDE
701: GATGTHSKSS KKSVIDDSED HNVESELNDD GDYSGGTTRG SSRSINRKRR GNSDRMDSAK KSKRYKENDR AHNGKDRSYT GHLSS
001: MEQANEKEEE ERHEEAAGEK ESFEESKEKA AEMSRKEKRK AMKKLKRKQV RKEIAAKERE EAKAKLNDPA EQERLKAIEE EDARRREKEL KDFEESERAW
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHEIS DRPTSNPLPP
201: GSEASANYQN VSSAQQILES VAQEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPN KSCTLLMKNM YNGPGITWEQ DEGLEYTDEE AELCYEEFYE
301: DVHTEFLKYG ELVNFKVCRN GSFHLKGNVY VHYRSLESAI LAYQSINGRY FAGKQVNCEF VNISRWKVAI CGEYMKSRLK TCSRGSACNF IHCFRNPGGD
401: YEWADHDRPP PRFWIHKMTS LFGYSDEKHM EHESSGSLND SISDLSTDSH RQPSRRSRSR DHDHANVGST PSYRSRKYHG DTQDSTREDK LRRHAENCHD
501: GDDSPSRDGS LEREMYKERR YAKDTLHRDS RWSEHSPGHR VGRKRIHGRY SDDDSADGDD YGRRGTGHKR KPRRGTDSGV QEQMDNEKDR KTHRSSRKHS
601: REGSSADKEE GHEHDRVHTV SDKSHRERSK HRHERSSSRY SHEEDSTESR HHQHKESDKK RSVETSPVGY QSDKDRDRSK QRQRYKSDDP ESDQSRKGKR
701: QSEENSDRET HKERRHRHRK RRRTQNSDDQ NPKESEEVEE EIERWRPV
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHEIS DRPTSNPLPP
201: GSEASANYQN VSSAQQILES VAQEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPN KSCTLLMKNM YNGPGITWEQ DEGLEYTDEE AELCYEEFYE
301: DVHTEFLKYG ELVNFKVCRN GSFHLKGNVY VHYRSLESAI LAYQSINGRY FAGKQVNCEF VNISRWKVAI CGEYMKSRLK TCSRGSACNF IHCFRNPGGD
401: YEWADHDRPP PRFWIHKMTS LFGYSDEKHM EHESSGSLND SISDLSTDSH RQPSRRSRSR DHDHANVGST PSYRSRKYHG DTQDSTREDK LRRHAENCHD
501: GDDSPSRDGS LEREMYKERR YAKDTLHRDS RWSEHSPGHR VGRKRIHGRY SDDDSADGDD YGRRGTGHKR KPRRGTDSGV QEQMDNEKDR KTHRSSRKHS
601: REGSSADKEE GHEHDRVHTV SDKSHRERSK HRHERSSSRY SHEEDSTESR HHQHKESDKK RSVETSPVGY QSDKDRDRSK QRQRYKSDDP ESDQSRKGKR
701: QSEENSDRET HKERRHRHRK RRRTQNSDDQ NPKESEEVEE EIERWRPV
Arabidopsis Description
Zinc finger CCCH domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.