CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43656	Soybean	nucleus	78.97	53.92
HORVU5Hr1G103280.3	Barley	cytosol	49.63	36.71
Bra018446.1-P	Field mustard	nucleus	55.99	30.66
PGSC0003DMT400053361	Potato	nucleus	56.97	30.62
AT1G10320.1	Thale cress	nucleus	56.48	30.52
CDY20942	Canola	nucleus	56.23	30.5
TraesCS5D01G431900.1	Wheat	nucleus	55.5	30.43
TraesCS5A01G423300.2	Wheat	nucleus	55.99	30.33
TraesCS5B01G425300.2	Wheat	nucleus	55.75	30.32
Solyc01g103090.2.1	Tomato	nucleus	56.97	29.68
GSMUA_Achr6P12770_001	Banana	nucleus	60.39	29.62
OQU85120	Sorghum	nucleus, plastid	53.3	28.42
Zm00001d016836_P002	Maize	nucleus	52.32	28.2
VIT_12s0035g01790.t01	Wine grape	nucleus	60.64	28.05
KRG89181	Soybean	nucleus	16.87	25.75
KRH49506	Soybean	nucleus	16.14	24.35
KRH26573	Soybean	nucleus	17.11	22.22
KRH67839	Soybean	endoplasmic reticulum, nucleus	15.89	20.7
KRG96125	Soybean	nucleus	15.65	20.38
Os02t0557500-01	Rice	cytosol, nucleus	18.34	18.25

Protein Annotations

EntrezGene:100794145	MapMan:16.4.4.3	Gene3D:3.30.70.330	EMBL:ACUP02009740	ncoils:Coil	EnsemblPlantsGene:GLYMA_15G244700
GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0030628	GO:GO:0046872	GO:GO:0089701	InterPro:IPR000504
InterPro:IPR000571	InterPro:IPR012677	UniProt:K7MDM8	EnsemblPlants:KRH13511	ProteinID:KRH13511	ProteinID:KRH13511.1
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00642	PRINTS:PR01848	PFscan:PS50102	PFscan:PS50103
PANTHER:PTHR12620	PANTHER:PTHR12620:SF4	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00356
SMART:SM00361	SUPFAM:SSF54928	InterPro:U2AF_small	UniParc:UPI000295C1BF	InterPro:Znf_CCCH	SEG:seg

Description

hypothetical protein

Coordinates

chr15:+:46608312..46615004

Molecular Weight (calculated)

48370.4 Da

IEP (calculated)

6.165

GRAVY (calculated)

-1.167

Length

409 amino acids

Sequence
(BLAST)

001: MSREEKRKAM KKMKRKQARK EASERERREE EERLIDPEEQ RQMQLLEQQE AERMQRDMIL FQEREKEWMD TVIARKQQQQ QHQQQREEED EDDEFDCVEE
101: EGPPEIIWQG NEIIFKKKQL RVRVTDKDKP KPNETNQNDH QQEDNRPTSN PLPPDSTLEN VAQQIPNFGT EQDKAHCPFH LKTGACCFGI RCSRVHFYPD
201: KSSTFLIKNM YNGPGLACDR DQDEGLEYKD EEVERCFEEF YEDVHTEFLK FGEVVNFKVC KNGSFHWRGN VYVQYKSLDS ALLAYNSVNG RYFAGKQVSC
301: QFVNLTRWKV AICGEYMKSG FKTCSHGTAC NFIHCFRNPG GDYEWADSDK PPPKFWVKKM ITLFGFSDDY ETSREQGNLS LSKTDSDRSY HSRRRSRSRE
401: TTDQLKCGH

Best Arabidopsis Sequence Match ( AT1G10320.2 )
(BLAST)

001: MEQANEKEEE ERHEEAAGEK ESFEESKEKA AEMSRKEKRK AMKKLKRKQV RKEIAAKERE EAKAKLNDPA EQERLKAIEE EDARRREKEL KDFEESERAW
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHEIS DRPTSNPLPP
201: GSEASANYQN VSSAQQILES VAQEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPN KSCTLLMKNM YNGPGITWEQ DEGLEYTDEE AELCYEEFYE
301: DVHTEFLKYG ELVNFKVCRN GSFHLKGNVY VHYRSLESAI LAYQSINGRY FAGKQVNCEF VNISRWKVAI CGEYMKSRLK TCSRGSACNF IHCFRNPGGD
401: YEWADHDRPP PRFWIHKMTS LFGYSDEKHM EHESSGSLND SISDLSTDSH RQPSRRSRSR DHDHANVGST PSYRSRKYHG DTQDSTREDK LRRHAENCHD
501: GDDSPSRDGS LEREMYKERR YAKDTLHRDS RWSEHSPGHR VGRKRIHGRY SDDDSADGDD YGRRGTGHKR KPRRGTDSGV QEQMDNEKDR KTHRSSRKHS
601: REGSSADKEE GHEHDRVHTV SDKSHRERSK HRHERSSSRY SHEEDSTESR HHQHKESDKK RSVETSPVGY QSDKDRDRSK QRQRYKSDDP ESDQSRKGKR
701: QSEENSDRET HKERRHRHRK RRRTQNSDDQ NPKESEEVEE EIERWRPV

Arabidopsis Description

Zinc finger CCCH domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.