Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH13511 | Soybean | nucleus | 29.62 | 60.39 |
| HORVU5Hr1G103280.3 | Barley | cytosol | 30.82 | 46.47 |
| KRH43656 | Soybean | nucleus | 31.41 | 43.74 |
| TraesCS5D01G431900.1 | Wheat | nucleus | 35.97 | 40.21 |
| PGSC0003DMT400053361 | Potato | nucleus | 36.69 | 40.21 |
| TraesCS5B01G425300.2 | Wheat | nucleus | 35.73 | 39.63 |
| TraesCS5A01G423300.2 | Wheat | nucleus | 35.85 | 39.6 |
| Bra018446.1-P | Field mustard | nucleus | 35.37 | 39.49 |
| Solyc01g103090.2.1 | Tomato | nucleus | 36.81 | 39.11 |
| OQU85120 | Sorghum | nucleus, plastid | 35.73 | 38.85 |
| CDY20942 | Canola | nucleus | 35.01 | 38.73 |
| AT1G10320.1 | Thale cress | nucleus | 35.13 | 38.71 |
| Zm00001d016836_P002 | Maize | nucleus | 34.65 | 38.08 |
| VIT_12s0035g01790.t01 | Wine grape | nucleus | 38.13 | 35.97 |
| GSMUA_Achr11P... | Banana | cytosol | 8.15 | 33.01 |
| GSMUA_Achr9P12340_001 | Banana | cytosol | 9.59 | 31.62 |
| GSMUA_Achr11P... | Banana | nucleus | 8.51 | 30.47 |
| Os02t0557500-01 | Rice | cytosol, nucleus | 13.43 | 27.25 |
| GSMUA_Achr11P... | Banana | extracellular | 2.76 | 20.91 |
Protein Annotations
| MapMan:16.4.4.3 | Gene3D:3.30.70.330 | ncoils:Coil | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0046872 | GO:GO:0089701 |
| EnsemblPlantsGene:GSMUA_Achr6G12770_001 | EnsemblPlants:GSMUA_Achr6P12770_001 | EnsemblPlants:GSMUA_Achr6T12770_001 | InterPro:IPR000504 | InterPro:IPR000571 | InterPro:IPR012677 |
| UniProt:M0T6H5 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00642 | PRINTS:PR01848 | PFscan:PS50102 | PFscan:PS50103 |
| PANTHER:PTHR12620 | PANTHER:PTHR12620:SF4 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00356 | SUPFAM:SSF54928 |
| InterPro:U2AF_small | UniParc:UPI000294E3AD | InterPro:Znf_CCCH | SEG:seg | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G12770_001]
Coordinates
chr6:+:8541539..8555015
Molecular Weight (calculated)
97174.1 Da
IEP (calculated)
7.274
GRAVY (calculated)
-1.207
Length
834 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEPQPTDSF AGDPPPMADP SSGAVSPEPV AEAGATADVG CTSRKEKRKA LKKLKRKQTR REAAIREREE DEARSNDPEE QRKIRLREQE EVEIAERERK
101: LFEERERLWF EAAAARKAAE EEEEQRRKEL MEKSQEKNQH DAHVNEVDGD DEWDYIEEGP AEIIWQGNEI IVKKKRVRVA KKNANKQQSE EDDNRPTSNP
201: LPPQSVAFAS YMNGPSISAQ EVLERVAQEV PNFGTEQDKA HCPFHLKTGA CRFGPRCSRV HFHPDKSCTL LIKNMYNGPG LVSEQDEGLE YTDEEVERCY
301: EEFYEDVHTE FLKFGELVNF KVCKNGSYHL RGNVYVHYMF LDSAVLAYNN INGRFFAGKQ ITCEFVGVTK WKVAICGEYM KSKLKTCSHG SACNFIHCFR
401: NPGGDYEWAD WDNPPPKYWI RKMIALFGPS NEYEHHKQVD LKEFDRPRCS DRKRTPIDKC RYFSRRSDSE LDELDNDSPA KNRREQSSRS KEKPASLEKH
501: ERSEEYDKLN YYDDREYKRK HREDSLGQKR VKPYVNEHMK SKRYKSRFQE QQKYAQFSDY TDDDRELSDG HSNSLSSDKS SHRLSIDEER YNGRSCSDDL
601: GSDVDPSRRI TSQHSGCLTE SREYGRLSKH KSYDYEIDGH SGKFGKPNDH HLRVSSHDLD WKARSEGSDL EDADARLPHS RSRREKKHDR SSRKRNLHQE
701: KCDDNDRSDE PSNKKLKRKE EKRYSGSSLR IRSVGISRPR WVVDRSAAGS WGERGGKGSV CVGILDSWFL WVFSERLSRN WDYFSGFSGF QDRVNFEGQY
801: ESLVGFDSRV RSGRRRDPIH LRLSYTLWSW GNET
101: LFEERERLWF EAAAARKAAE EEEEQRRKEL MEKSQEKNQH DAHVNEVDGD DEWDYIEEGP AEIIWQGNEI IVKKKRVRVA KKNANKQQSE EDDNRPTSNP
201: LPPQSVAFAS YMNGPSISAQ EVLERVAQEV PNFGTEQDKA HCPFHLKTGA CRFGPRCSRV HFHPDKSCTL LIKNMYNGPG LVSEQDEGLE YTDEEVERCY
301: EEFYEDVHTE FLKFGELVNF KVCKNGSYHL RGNVYVHYMF LDSAVLAYNN INGRFFAGKQ ITCEFVGVTK WKVAICGEYM KSKLKTCSHG SACNFIHCFR
401: NPGGDYEWAD WDNPPPKYWI RKMIALFGPS NEYEHHKQVD LKEFDRPRCS DRKRTPIDKC RYFSRRSDSE LDELDNDSPA KNRREQSSRS KEKPASLEKH
501: ERSEEYDKLN YYDDREYKRK HREDSLGQKR VKPYVNEHMK SKRYKSRFQE QQKYAQFSDY TDDDRELSDG HSNSLSSDKS SHRLSIDEER YNGRSCSDDL
601: GSDVDPSRRI TSQHSGCLTE SREYGRLSKH KSYDYEIDGH SGKFGKPNDH HLRVSSHDLD WKARSEGSDL EDADARLPHS RSRREKKHDR SSRKRNLHQE
701: KCDDNDRSDE PSNKKLKRKE EKRYSGSSLR IRSVGISRPR WVVDRSAAGS WGERGGKGSV CVGILDSWFL WVFSERLSRN WDYFSGFSGF QDRVNFEGQY
801: ESLVGFDSRV RSGRRRDPIH LRLSYTLWSW GNET
001: MEQANEKEEE ERHEEAAGEK ESFEESKEKA AEMSRKEKRK AMKKLKRKQV RKEIAAKERE EAKAKLNDPA EQERLKAIEE EDARRREKEL KDFEESERAW
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHEIS DRPTSNPLPP
201: GSEASANYQN VSSAQQILES VAQEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPN KSCTLLMKNM YNGPGITWEQ DEGLEYTDEE AELCYEEFYE
301: DVHTEFLKYG ELVNFKVCRN GSFHLKGNVY VHYRSLESAI LAYQSINGRY FAGKQVNCEF VNISRWKVAI CGEYMKSRLK TCSRGSACNF IHCFRNPGGD
401: YEWADHDRPP PRFWIHKMTS LFGYSDEKHM EHESSGSLND SISDLSTDSH RQPSRRSRSR DHDHANVGST PSYRSRKYHG DTQDSTREDK LRRHAENCHD
501: GDDSPSRDGS LEREMYKERR YAKDTLHRDS RWSEHSPGHR VGRKRIHGRY SDDDSADGDD YGRRGTGHKR KPRRGTDSGV QEQMDNEKDR KTHRSSRKHS
601: REGSSADKEE GHEHDRVHTV SDKSHRERSK HRHERSSSRY SHEEDSTESR HHQHKESDKK RSVETSPVGY QSDKDRDRSK QRQRYKSDDP ESDQSRKGKR
701: QSEENSDRET HKERRHRHRK RRRTQNSDDQ NPKESEEVEE EIERWRPV
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHEIS DRPTSNPLPP
201: GSEASANYQN VSSAQQILES VAQEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPN KSCTLLMKNM YNGPGITWEQ DEGLEYTDEE AELCYEEFYE
301: DVHTEFLKYG ELVNFKVCRN GSFHLKGNVY VHYRSLESAI LAYQSINGRY FAGKQVNCEF VNISRWKVAI CGEYMKSRLK TCSRGSACNF IHCFRNPGGD
401: YEWADHDRPP PRFWIHKMTS LFGYSDEKHM EHESSGSLND SISDLSTDSH RQPSRRSRSR DHDHANVGST PSYRSRKYHG DTQDSTREDK LRRHAENCHD
501: GDDSPSRDGS LEREMYKERR YAKDTLHRDS RWSEHSPGHR VGRKRIHGRY SDDDSADGDD YGRRGTGHKR KPRRGTDSGV QEQMDNEKDR KTHRSSRKHS
601: REGSSADKEE GHEHDRVHTV SDKSHRERSK HRHERSSSRY SHEEDSTESR HHQHKESDKK RSVETSPVGY QSDKDRDRSK QRQRYKSDDP ESDQSRKGKR
701: QSEENSDRET HKERRHRHRK RRRTQNSDDQ NPKESEEVEE EIERWRPV
Arabidopsis Description
Zinc finger CCCH domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.