CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13511	Soybean	nucleus	53.92	78.97
HORVU5Hr1G103280.3	Barley	cytosol	34.72	37.61
Bra018446.1-P	Field mustard	nucleus	43.07	34.54
CDY20942	Canola	nucleus	43.24	34.35
TraesCS5D01G431900.1	Wheat	nucleus	42.07	33.78
TraesCS5B01G425300.2	Wheat	nucleus	42.07	33.51
AT1G10320.1	Thale cress	nucleus	41.9	33.16
PGSC0003DMT400053361	Potato	nucleus	42.07	33.11
TraesCS5A01G423300.2	Wheat	nucleus	41.57	32.98
Solyc01g103090.2.1	Tomato	nucleus	41.24	31.46
GSMUA_Achr6P12770_001	Banana	nucleus	43.74	31.41
KRH49506	Soybean	nucleus	14.02	31.0
KRG89181	Soybean	nucleus	13.86	30.97
VIT_12s0035g01790.t01	Wine grape	nucleus	44.91	30.43
OQU85120	Sorghum	nucleus, plastid	38.73	30.25
Zm00001d016836_P002	Maize	nucleus	37.56	29.64
KRH26573	Soybean	nucleus	13.86	26.35
KRH67839	Soybean	endoplasmic reticulum, nucleus	13.19	25.16
KRG96125	Soybean	nucleus	12.85	24.52
Os02t0557500-01	Rice	cytosol, nucleus	16.69	24.33

Protein Annotations

EntrezGene:100789091	MapMan:16.4.4.3	Gene3D:3.30.70.330	UniProt:A0A0R0ITE7	EMBL:ACUP02004874	ncoils:Coil
EnsemblPlantsGene:GLYMA_08G162800	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	GO:GO:0089701	InterPro:IPR000504	InterPro:IPR000571
InterPro:IPR012677	ProteinID:KRH43655.1	EnsemblPlants:KRH43656	ProteinID:KRH43656	ProteinID:KRH43656.1	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF00642	PRINTS:PR01848	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR12620
PANTHER:PTHR12620:SF4	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00356	SMART:SM00360
SMART:SM00361	SUPFAM:SSF54928	InterPro:U2AF_small	UniParc:UPI0003DEAB9E	InterPro:Znf_CCCH	SEG:seg

Description

hypothetical protein

Coordinates

chr8:+:12739174..12749320

Molecular Weight (calculated)

71453.4 Da

IEP (calculated)

7.116

GRAVY (calculated)

-1.523

Length

599 amino acids

Sequence
(BLAST)

001: MEEKDFIEEG KSMSRKEKRK AMKKMKRKQA RKEEAERERR EEEERLNNPE EQRRMQLLEQ QEAERMQRDM ILFREREKAW MDTVITQKQQ QQQQQQQEDE
101: DDEYEYVEEE GPPEIIWQGN EIIFKKKQLR VRVTDRDKPK PNETNQNDHQ QEEDNKPTSN PLPPESLTLE NVAQQIPNFG TEQDKAHCPF HLKTGACRFG
201: IRCSRVHFYP DKSSTLLIKN MYSGPGLACD QDQDEGLEYT DEEVERCFEE FYEDVHTEFL KFGEIVNFKV CKNGSFHLRG NVYVQYKSLD SALLAYNTVN
301: GRYFAGKQVS CQFVNLTRWK VAICGEYMKS GFKTCSHGTT CNFIHCFRNP GGDYEWADSD KPPPKFWVKK MIALFGYSDD YETSMEQGNM SLSKTDSDRT
401: CHSRRRSRSR EMDQLNCGHS GRRKQRDERK HRTPNEDWNG SFKRKSRGRT PDSGAVSDRE WLEKEENRET HHEYTMNSRR HEEDSDVEWV TRDNEKQHGR
501: EGRNSRKQNR DEKRHHISKS NYQGGRDASE SEKDFLGRGE METQHDYYSR KSSRYRRSGL DDDDYKYHEN ENDKVDGGWS RKDSYKREEH HHKKKRSKH

Best Arabidopsis Sequence Match ( AT1G10320.2 )
(BLAST)

001: MEQANEKEEE ERHEEAAGEK ESFEESKEKA AEMSRKEKRK AMKKLKRKQV RKEIAAKERE EAKAKLNDPA EQERLKAIEE EDARRREKEL KDFEESERAW
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHEIS DRPTSNPLPP
201: GSEASANYQN VSSAQQILES VAQEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPN KSCTLLMKNM YNGPGITWEQ DEGLEYTDEE AELCYEEFYE
301: DVHTEFLKYG ELVNFKVCRN GSFHLKGNVY VHYRSLESAI LAYQSINGRY FAGKQVNCEF VNISRWKVAI CGEYMKSRLK TCSRGSACNF IHCFRNPGGD
401: YEWADHDRPP PRFWIHKMTS LFGYSDEKHM EHESSGSLND SISDLSTDSH RQPSRRSRSR DHDHANVGST PSYRSRKYHG DTQDSTREDK LRRHAENCHD
501: GDDSPSRDGS LEREMYKERR YAKDTLHRDS RWSEHSPGHR VGRKRIHGRY SDDDSADGDD YGRRGTGHKR KPRRGTDSGV QEQMDNEKDR KTHRSSRKHS
601: REGSSADKEE GHEHDRVHTV SDKSHRERSK HRHERSSSRY SHEEDSTESR HHQHKESDKK RSVETSPVGY QSDKDRDRSK QRQRYKSDDP ESDQSRKGKR
701: QSEENSDRET HKERRHRHRK RRRTQNSDDQ NPKESEEVEE EIERWRPV

Arabidopsis Description

Zinc finger CCCH domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.