Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G425300.2 | Wheat | nucleus | 71.25 | 52.39 |
| TraesCS5D01G431900.1 | Wheat | nucleus | 70.52 | 52.28 |
| TraesCS5A01G423300.2 | Wheat | nucleus | 70.16 | 51.39 |
| KRH13511 | Soybean | nucleus | 36.71 | 49.63 |
| Zm00001d016836_P002 | Maize | nucleus | 56.24 | 40.98 |
| OQU85120 | Sorghum | nucleus, plastid | 54.61 | 39.37 |
| KRH43656 | Soybean | nucleus | 37.61 | 34.72 |
| Os02t0557500-01 | Rice | cytosol, nucleus | 23.33 | 31.39 |
| PGSC0003DMT400053361 | Potato | nucleus | 42.68 | 31.01 |
| GSMUA_Achr6P12770_001 | Banana | nucleus | 46.47 | 30.82 |
| Bra018446.1-P | Field mustard | nucleus | 41.23 | 30.52 |
| Solyc01g103090.2.1 | Tomato | nucleus | 43.04 | 30.32 |
| AT1G10320.1 | Thale cress | nucleus | 41.41 | 30.25 |
| CDY20942 | Canola | nucleus | 41.23 | 30.24 |
| HORVU3Hr1G061060.2 | Barley | nucleus | 13.74 | 27.05 |
| HORVU5Hr1G073660.1 | Barley | cytosol | 9.22 | 26.98 |
| VIT_12s0035g01790.t01 | Wine grape | nucleus | 42.31 | 26.47 |
| HORVU5Hr1G073680.1 | Barley | nucleus | 13.2 | 23.25 |
| HORVU1Hr1G087660.2 | Barley | nucleus | 12.12 | 20.62 |
Protein Annotations
| MapMan:16.4.4.3 | Gene3D:3.30.70.330 | UniProt:A0A287SIV2 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0046872 | GO:GO:0089701 |
| EnsemblPlantsGene:HORVU5Hr1G103280 | EnsemblPlants:HORVU5Hr1G103280.3 | InterPro:IPR000504 | InterPro:IPR000571 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFAM:PF00642 | PRINTS:PR01848 | PFscan:PS50102 | PFscan:PS50103 | PANTHER:PTHR12620 |
| PANTHER:PTHR12620:SF4 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00356 | SMART:SM00361 |
| SUPFAM:SSF54928 | InterPro:U2AF_small | UniParc:UPI000B469087 | InterPro:Znf_CCCH | SEG:seg | : |
Description
No Description!
Coordinates
chrchr5H:-:615388627..615395761
Molecular Weight (calculated)
62254.9 Da
IEP (calculated)
6.944
GRAVY (calculated)
-0.786
Length
553 amino acids
Sequence
(BLAST)
(BLAST)
001: DASDRARRAF EDAERRWLEK AASRAAEEAA AEEEACAAEA STRDKYNDDH RDETEEDGEW EYVEDGPAEI IWQGNEIIVK KKKVKIPKKA EAKPLSQEEE
101: RPTSNPLPPQ SVAVDSQRRE PSLSARELLE KVAQETPNFG TEQDKAHCPF YLKTAACRFG VRCSRVHFYP DKSCTLLMKN MYNGPGLVLE QDEGLEFTDE
201: EIEQSYEEFY EDVHTEFLKF GELVNFKVCR NGSFHLRGNV YVHYKALDSA LLAYNSMNGR YFAGKQITCE FVALTKWKSA ICGEYMRSRF KTCSHGVACN
301: FIHCFRNPGG DYEWADWDNP PPKYWTRKMA ALFGPSDDAV FDKASDAPDF ERLHSSDRKR LRSSDGRYIS SRHRDGDAHK RHSSRVFSHS KQEQSNYIMK
401: YGHTRHSREP STAKKQRGHE IEDDIGRYCS PVENERVXXX XXXKECPKHT SVKRNIEMAM AMEHVETMVK SSPGSTDLNS TKVWSLDVLI GLQNLLMQAR
501: AEVLHAASPP TGTVITIGVG GNPWMIPILK GATPLRTNHQ GKRTLPKVAR DIT
101: RPTSNPLPPQ SVAVDSQRRE PSLSARELLE KVAQETPNFG TEQDKAHCPF YLKTAACRFG VRCSRVHFYP DKSCTLLMKN MYNGPGLVLE QDEGLEFTDE
201: EIEQSYEEFY EDVHTEFLKF GELVNFKVCR NGSFHLRGNV YVHYKALDSA LLAYNSMNGR YFAGKQITCE FVALTKWKSA ICGEYMRSRF KTCSHGVACN
301: FIHCFRNPGG DYEWADWDNP PPKYWTRKMA ALFGPSDDAV FDKASDAPDF ERLHSSDRKR LRSSDGRYIS SRHRDGDAHK RHSSRVFSHS KQEQSNYIMK
401: YGHTRHSREP STAKKQRGHE IEDDIGRYCS PVENERVXXX XXXKECPKHT SVKRNIEMAM AMEHVETMVK SSPGSTDLNS TKVWSLDVLI GLQNLLMQAR
501: AEVLHAASPP TGTVITIGVG GNPWMIPILK GATPLRTNHQ GKRTLPKVAR DIT
001: MEQANEKEEE ERHEEAAGEK ESFEESKEKA AEMSRKEKRK AMKKLKRKQV RKEIAAKERE EAKAKLNDPA EQERLKAIEE EDARRREKEL KDFEESERAW
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHEIS DRPTSNPLPP
201: GSEASANYQN VSSAQQILES VAQEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPN KSCTLLMKNM YNGPGITWEQ DEGLEYTDEE AELCYEEFYE
301: DVHTEFLKYG ELVNFKVCRN GSFHLKGNVY VHYRSLESAI LAYQSINGRY FAGKQVNCEF VNISRWKVAI CGEYMKSRLK TCSRGSACNF IHCFRNPGGD
401: YEWADHDRPP PRFWIHKMTS LFGYSDEKHM EHESSGSLND SISDLSTDSH RQPSRRSRSR DHDHANVGST PSYRSRKYHG DTQDSTREDK LRRHAENCHD
501: GDDSPSRDGS LEREMYKERR YAKDTLHRDS RWSEHSPGHR VGRKRIHGRY SDDDSADGDD YGRRGTGHKR KPRRGTDSGV QEQMDNEKDR KTHRSSRKHS
601: REGSSADKEE GHEHDRVHTV SDKSHRERSK HRHERSSSRY SHEEDSTESR HHQHKESDKK RSVETSPVGY QSDKDRDRSK QRQRYKSDDP ESDQSRKGKR
701: QSEENSDRET HKERRHRHRK RRRTQNSDDQ NPKESEEVEE EIERWRPV
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHEIS DRPTSNPLPP
201: GSEASANYQN VSSAQQILES VAQEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPN KSCTLLMKNM YNGPGITWEQ DEGLEYTDEE AELCYEEFYE
301: DVHTEFLKYG ELVNFKVCRN GSFHLKGNVY VHYRSLESAI LAYQSINGRY FAGKQVNCEF VNISRWKVAI CGEYMKSRLK TCSRGSACNF IHCFRNPGGD
401: YEWADHDRPP PRFWIHKMTS LFGYSDEKHM EHESSGSLND SISDLSTDSH RQPSRRSRSR DHDHANVGST PSYRSRKYHG DTQDSTREDK LRRHAENCHD
501: GDDSPSRDGS LEREMYKERR YAKDTLHRDS RWSEHSPGHR VGRKRIHGRY SDDDSADGDD YGRRGTGHKR KPRRGTDSGV QEQMDNEKDR KTHRSSRKHS
601: REGSSADKEE GHEHDRVHTV SDKSHRERSK HRHERSSSRY SHEEDSTESR HHQHKESDKK RSVETSPVGY QSDKDRDRSK QRQRYKSDDP ESDQSRKGKR
701: QSEENSDRET HKERRHRHRK RRRTQNSDDQ NPKESEEVEE EIERWRPV
Arabidopsis Description
Zinc finger CCCH domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.