CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016836_P002	Maize	nucleus	58.93	59.55
HORVU5Hr1G103280.3	Barley	cytosol	39.37	54.61
KRH13511	Soybean	nucleus	28.42	53.3
TraesCS5A01G423300.2	Wheat	nucleus	49.41	50.2
TraesCS5B01G425300.2	Wheat	nucleus	48.24	49.2
TraesCS5D01G431900.1	Wheat	nucleus	47.72	49.06
KRH43656	Soybean	nucleus	30.25	38.73
GSMUA_Achr6P12770_001	Banana	nucleus	38.85	35.73
Os02t0557500-01	Rice	cytosol, nucleus	18.9	35.28
Bra018446.1-P	Field mustard	nucleus	34.29	35.21
CDY20942	Canola	nucleus	34.03	34.62
AT1G10320.1	Thale cress	nucleus	33.77	34.21
PGSC0003DMT400053361	Potato	nucleus	33.77	34.03
Solyc01g103090.2.1	Tomato	nucleus	34.42	33.63
VIT_12s0035g01790.t01	Wine grape	nucleus	35.07	30.43
OQU87301	Sorghum	nucleus	10.82	28.82
KXG35922	Sorghum	nucleus	10.56	28.32
EES18681	Sorghum	nucleus	11.21	28.01

Protein Annotations

MapMan:16.4.4.3	Gene3D:3.30.70.330	UniProt:A0A1Z5RN03	ncoils:Coil	GO:GO:0000398	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0046872
GO:GO:0089701	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlants:OQU85120
ProteinID:OQU85120	ProteinID:OQU85120.1	PFAM:PF00076	PFAM:PF00642	PRINTS:PR01848	PFscan:PS50102
PFscan:PS50103	PANTHER:PTHR12620	PANTHER:PTHR12620:SF4	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk
SMART:SM00356	SMART:SM00361	EnsemblPlantsGene:SORBI_3004G178300	SUPFAM:SSF54928	InterPro:U2AF_small	UniParc:UPI000B424C9A
InterPro:Znf_CCCH	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:53066203..53071951

Molecular Weight (calculated)

87452.8 Da

IEP (calculated)

8.445

GRAVY (calculated)

-1.279

Length

767 amino acids

Sequence
(BLAST)

001: MSSAVTAGGG AAAADGAPEA AATALTRREK RRERKKERRR RARREAAARA RAAAEAEAPA ATDPEEERRL LEIQEAEAAA ESERARLAFE DAERRWLEAA
101: AARAAEKAAA AAAEEEARAA EASARKEPKD DQGNQSEEDS EWEYVEDGPA EIIWKGNEII VKKKKVKVPK GSKEKLPVQE EDRPTSNPLP PQSVAFAAQR
201: REPSLSAQEV LDKVAQETPN FGTEQDKAHC PFHLKTGACR FGVRCSRVHF YPDKSSTLLM KNMYNGPGLA LDQDEGLEIA CSFVLSSELR LEAYSDQFTD
301: EEIEQSYEEF YEDVHTEFLK FGELVNFKVC RNGCFHLRGN VYVHYKSLDS ALLAYSSMNG RYFAGKQITC EFVAVTRWKA AICGDYMRSR YKTCSHGVAC
401: NFIHCFRNPG GDYEWADWDN PPPRYWIRKM TALFGPSVDT MYEKESDTPN FKSSEGSDRK KLKISSNRYV SRGSRDEDVH TRHSQDYSHS KQEHSSHSMN
501: YEYKRHRRDS SSVDKHRRRD VEDTNGRQFS TMENDSESHR HKHEERHRSD HGNGEKKDDK TRPRKHCSDR RGSLEPGYSD WPSDFTDTDI RKGSSGEKST
601: SRYEYDDAKR SRRGSSEYYN LERHHSTAQK PTGKEHNTKR RSRRDIEDYY HDEKDGGRGK SRKHDRWVAT NSDVDSDVDR YQSSSCKGTR SGRKEDAHPD
701: SEAWHQRSSR STKDDRRRKR HSGTEEGTSE SSSGDLSSDS GSRRSRSSEN FSAHRSKRKR SVGKKSS

Best Arabidopsis Sequence Match ( AT1G10320.2 )
(BLAST)

001: MEQANEKEEE ERHEEAAGEK ESFEESKEKA AEMSRKEKRK AMKKLKRKQV RKEIAAKERE EAKAKLNDPA EQERLKAIEE EDARRREKEL KDFEESERAW
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHEIS DRPTSNPLPP
201: GSEASANYQN VSSAQQILES VAQEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPN KSCTLLMKNM YNGPGITWEQ DEGLEYTDEE AELCYEEFYE
301: DVHTEFLKYG ELVNFKVCRN GSFHLKGNVY VHYRSLESAI LAYQSINGRY FAGKQVNCEF VNISRWKVAI CGEYMKSRLK TCSRGSACNF IHCFRNPGGD
401: YEWADHDRPP PRFWIHKMTS LFGYSDEKHM EHESSGSLND SISDLSTDSH RQPSRRSRSR DHDHANVGST PSYRSRKYHG DTQDSTREDK LRRHAENCHD
501: GDDSPSRDGS LEREMYKERR YAKDTLHRDS RWSEHSPGHR VGRKRIHGRY SDDDSADGDD YGRRGTGHKR KPRRGTDSGV QEQMDNEKDR KTHRSSRKHS
601: REGSSADKEE GHEHDRVHTV SDKSHRERSK HRHERSSSRY SHEEDSTESR HHQHKESDKK RSVETSPVGY QSDKDRDRSK QRQRYKSDDP ESDQSRKGKR
701: QSEENSDRET HKERRHRHRK RRRTQNSDDQ NPKESEEVEE EIERWRPV

Arabidopsis Description

Zinc finger CCCH domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.