CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES08974
KXG28995
KXG29128

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42820.1	EES08974	AT4G36690.1	21798944
AT5G42820.1	KXG28995	AT4G36690.1	21798944
AT5G42820.1	KXG29128	AT4G36690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007784_P001	Maize	plastid	96.42	99.0
Zm00001d039014_P001	Maize	extracellular, plasma membrane, plastid	98.37	98.37
TraesCS1A01G397300.1	Wheat	nucleus	75.57	85.29
GSMUA_Achr11P...	Banana	cytosol	56.68	84.47
Os05t0564200-01	Rice	nucleus	82.74	83.55
GSMUA_Achr9P12340_001	Banana	cytosol	68.08	82.61
OQU87301	Sorghum	nucleus	76.22	81.25
TraesCS1D01G405300.3	Wheat	nucleus	77.2	80.89
VIT_18s0122g00480.t01	Wine grape	nucleus	70.68	79.78
HORVU1Hr1G087660.2	Barley	nucleus	79.15	74.77
TraesCS1B01G425600.2	Wheat	nucleus	78.83	74.01
KRH49506	Soybean	nucleus	64.82	73.43
KRG89181	Soybean	nucleus	63.19	72.39
AT5G42820.1	Thale cress	nucleus	66.45	72.08
KXG35922	Sorghum	nucleus	67.1	72.03
CDX95151	Canola	nucleus	65.47	71.53
CDY52374	Canola	nucleus	65.47	70.28
Bra027459.1-P	Field mustard	nucleus	65.8	69.42
AT1G27650.1	Thale cress	nucleus	65.8	68.24
Bra010926.1-P	Field mustard	nucleus	63.19	67.83
CDY60278	Canola	nucleus	53.09	67.08
CDX90100	Canola	nucleus	61.89	66.43
CDY11775	Canola	nucleus	62.54	66.21
CDY03934	Canola	nucleus	51.14	64.34
CDY46291	Canola	nucleus	28.99	63.57
Bra030057.1-P	Field mustard	nucleus	52.12	62.5
CDY21244	Canola	nucleus	31.92	59.76
OQU85120	Sorghum	nucleus, plastid	28.01	11.21

Protein Annotations

MapMan:16.4.1.2.11.1	Gene3D:3.30.70.330	EntrezGene:8063598	UniProt:C5YVK2	EnsemblPlants:EES18681	ProteinID:EES18681
ProteinID:EES18681.1	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030628	GO:GO:0046872	GO:GO:0089701
InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:OQU78425.1	ProteinID:OQU78426.1
PFAM:PF00076	PFAM:PF00642	PRINTS:PR01848	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR12620
PANTHER:PTHR12620:SF27	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00356	SMART:SM00361
EnsemblPlantsGene:SORBI_3009G232700	SUPFAM:SSF54928	unigene:Sbi.14767	InterPro:U2AF_small	UniParc:UPI0001A88E41	RefSeq:XP_002440251.1
InterPro:Znf_CCCH	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:57243373..57245946

Molecular Weight (calculated)

35640.2 Da

IEP (calculated)

9.108

GRAVY (calculated)

-1.311

Length

307 amino acids

Sequence
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLVLAN MYQRPDMITP GVDAQGQPID PEKMQEHFED FYEDIYEELG KFGEIENLNV
101: CDNLADHMIG NVYVQFREEE QAAAAYNALQ GRFYSGRPII VEYSPVTDFR EATCRQFEEN SCNRGGYCNF MHVKQIGRDL RRKLYGRSAS RRYHGRSRSR
201: SPPPQRRGHR DRDDYHHRDR DDYRGGGGGG RGRGSRHDRY DDGAGRGGRH DRYDDGAGRG GRHERYDDGG RRRHGSPPRR ARSPVRESSE ERRAKIEQWN
301: REREAKQ

Best Arabidopsis Sequence Match ( AT1G10320.2 )
(BLAST)

001: MEQANEKEEE ERHEEAAGEK ESFEESKEKA AEMSRKEKRK AMKKLKRKQV RKEIAAKERE EAKAKLNDPA EQERLKAIEE EDARRREKEL KDFEESERAW
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHEIS DRPTSNPLPP
201: GSEASANYQN VSSAQQILES VAQEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPN KSCTLLMKNM YNGPGITWEQ DEGLEYTDEE AELCYEEFYE
301: DVHTEFLKYG ELVNFKVCRN GSFHLKGNVY VHYRSLESAI LAYQSINGRY FAGKQVNCEF VNISRWKVAI CGEYMKSRLK TCSRGSACNF IHCFRNPGGD
401: YEWADHDRPP PRFWIHKMTS LFGYSDEKHM EHESSGSLND SISDLSTDSH RQPSRRSRSR DHDHANVGST PSYRSRKYHG DTQDSTREDK LRRHAENCHD
501: GDDSPSRDGS LEREMYKERR YAKDTLHRDS RWSEHSPGHR VGRKRIHGRY SDDDSADGDD YGRRGTGHKR KPRRGTDSGV QEQMDNEKDR KTHRSSRKHS
601: REGSSADKEE GHEHDRVHTV SDKSHRERSK HRHERSSSRY SHEEDSTESR HHQHKESDKK RSVETSPVGY QSDKDRDRSK QRQRYKSDDP ESDQSRKGKR
701: QSEENSDRET HKERRHRHRK RRRTQNSDDQ NPKESEEVEE EIERWRPV

Arabidopsis Description

Zinc finger CCCH domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.