Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_13s0139g00390.t01 | |
| VIT_13s0139g00410.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42820.1 | VIT_13s0139g00390.t01 | AT4G36690.1 | 21798944 |
| AT5G42820.1 | VIT_13s0139g00410.t01 | AT4G36690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d041639_P001 | Maize | cytosol | 55.15 | 87.21 |
| GSMUA_Achr11P... | Banana | cytosol | 63.24 | 83.5 |
| GSMUA_Achr9P12340_001 | Banana | cytosol | 77.21 | 83.0 |
| KRH49506 | Soybean | nucleus | 78.68 | 78.97 |
| CDX95151 | Canola | nucleus | 81.25 | 78.65 |
| AT5G42820.1 | Thale cress | nucleus | 81.62 | 78.45 |
| KRG89181 | Soybean | nucleus | 77.21 | 78.36 |
| Os01t0667800-01 | Rice | cytosol | 59.56 | 78.26 |
| CDY52374 | Canola | nucleus | 81.25 | 77.27 |
| Bra027459.1-P | Field mustard | nucleus | 81.62 | 76.29 |
| OQU87301 | Sorghum | nucleus | 80.51 | 76.04 |
| TraesCS3B01G272500.1 | Wheat | nucleus | 78.31 | 75.8 |
| AT1G27650.1 | Thale cress | nucleus | 81.62 | 75.0 |
| TraesCS1A01G397300.1 | Wheat | nucleus | 74.63 | 74.63 |
| TraesCS3A01G246800.1 | Wheat | nucleus | 76.47 | 74.55 |
| TraesCS3D01G244700.1 | Wheat | nucleus | 75.74 | 73.84 |
| HORVU3Hr1G061060.2 | Barley | nucleus | 75.74 | 73.31 |
| Zm00001d007784_P001 | Maize | plastid | 79.78 | 72.58 |
| Zm00001d020954_P001 | Maize | nucleus | 75.74 | 71.78 |
| KXG35922 | Sorghum | nucleus | 75.37 | 71.68 |
| Bra010926.1-P | Field mustard | nucleus | 75.0 | 71.33 |
| CDY11775 | Canola | nucleus | 75.74 | 71.03 |
| EES18681 | Sorghum | nucleus | 79.78 | 70.68 |
| CDX90100 | Canola | nucleus | 74.26 | 70.63 |
| Zm00001d009570_P001 | Maize | nucleus, plastid | 78.68 | 70.39 |
| CDY60278 | Canola | nucleus | 62.87 | 70.37 |
| Zm00001d039014_P001 | Maize | extracellular, plasma membrane, plastid | 79.41 | 70.36 |
| CDY21244 | Canola | nucleus | 42.28 | 70.12 |
| CDY03934 | Canola | nucleus | 62.87 | 70.08 |
| CDY46291 | Canola | nucleus | 36.03 | 70.0 |
| TraesCS1D01G405300.3 | Wheat | nucleus | 75.37 | 69.97 |
| Os05t0564200-01 | Rice | nucleus | 77.21 | 69.08 |
| Os09t0491756-01 | Rice | nucleus | 72.43 | 67.93 |
| Bra030057.1-P | Field mustard | nucleus | 61.4 | 65.23 |
| HORVU1Hr1G087660.2 | Barley | nucleus | 75.37 | 63.08 |
| TraesCS5D01G275300.1 | Wheat | nucleus | 72.06 | 62.82 |
| TraesCS1B01G425600.2 | Wheat | nucleus | 75.37 | 62.69 |
| TraesCS5A01G267500.1 | Wheat | nucleus | 72.06 | 62.22 |
| HORVU5Hr1G073680.1 | Barley | nucleus | 71.69 | 62.1 |
| VIT_08s0007g03950.t01 | Wine grape | nucleus | 68.01 | 48.18 |
| VIT_12s0035g01790.t01 | Wine grape | nucleus | 30.51 | 9.39 |
Protein Annotations
| EntrezGene:100266834 | wikigene:100266834 | MapMan:16.4.1.2.11.1 | Gene3D:3.30.70.330 | ProteinID:CCB62686 | ProteinID:CCB62686.1 |
| UniProt:F6I6W8 | EMBL:FN596759 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0030628 | GO:GO:0046872 |
| GO:GO:0089701 | InterPro:IPR000504 | InterPro:IPR000571 | InterPro:IPR012677 | EntrezGene:LOC100266834 | wikigene:LOC100266834 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00642 | PRINTS:PR01848 | PFscan:PS50102 | PFscan:PS50103 |
| PANTHER:PTHR12620 | PANTHER:PTHR12620:SF27 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00356 |
| SMART:SM00361 | SUPFAM:SSF54928 | InterPro:U2AF_small | UniParc:UPI00015CC67F | ArrayExpress:VIT_18s0122g00480 | EnsemblPlantsGene:VIT_18s0122g00480 |
| EnsemblPlants:VIT_18s0122g00480.t01 | unigene:Vvi.15598 | RefSeq:XP_002276502 | RefSeq:XP_002276502.1 | RefSeq:XP_003634337 | RefSeq:XP_003634337.1 |
| RefSeq:XP_010664026.1 | RefSeq:XP_010664027.1 | RefSeq:XP_010664028.1 | RefSeq:XP_010664029.1 | RefSeq:XP_010664030.1 | RefSeq:XP_010664031.1 |
| RefSeq:XP_019072250.1 | InterPro:Znf_CCCH | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr18:+:412256..413159
Molecular Weight (calculated)
31647.1 Da
IEP (calculated)
9.699
GRAVY (calculated)
-1.078
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDAQGQPID PRKIQEHFED FYEDIFEELG KFGEIESLNV
101: CDNLADHMIG NVYVQFKEEE QAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQFEEN NCNRGGYCNF MHVKLIGRDL RRKLFGRYSG YGRSRSRSRS
201: LSPRYRRDSD RRRSGDRGDY RGNGRRSGDK HGSDGGRRRH GSPRRSRSPV REGSEERRAR IELWNREREE RQ
101: CDNLADHMIG NVYVQFKEEE QAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQFEEN NCNRGGYCNF MHVKLIGRDL RRKLFGRYSG YGRSRSRSRS
201: LSPRYRRDSD RRRSGDRGDY RGNGRRSGDK HGSDGGRRRH GSPRRSRSPV REGSEERRAR IELWNREREE RQ
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
Arabidopsis Description
U2AF35BU2AF35B [Source:UniProtKB/TrEMBL;Acc:A0A178UM74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.