Factsheet for VIT_08s0007g03950.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	48.96	80.69
PGSC0003DMT400092352	Potato	cytosol	27.08	75.36
VIT_18s0122g00480.t01	Wine grape	nucleus	48.18	68.01
KRG96125	Soybean	nucleus	50.26	61.47
KRH67839	Soybean	endoplasmic reticulum, nucleus	50.26	61.47
Solyc10g083640.1.1	Tomato	nucleus	54.43	59.71
PGSC0003DMT400072640	Potato	nucleus	34.9	49.08
VIT_12s0035g01790.t01	Wine grape	nucleus	21.61	9.39

Protein Annotations

MapMan:16.4.1.2.11.1	Gene3D:3.30.70.330	ProteinID:CCB55396	ProteinID:CCB55396.1	UniProt:F6HKH4	EMBL:FN595991
GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0030628	GO:GO:0046872	GO:GO:0089701	InterPro:IPR000504
InterPro:IPR000571	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00642	PRINTS:PR01848
PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR12620	PANTHER:PTHR12620:SF17	InterPro:RBD_domain_sf	InterPro:RRM_dom
InterPro:RRM_dom_euk	SMART:SM00356	SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928	InterPro:U2AF_small
UniParc:UPI0002109E49	ArrayExpress:VIT_08s0007g03950	EnsemblPlantsGene:VIT_08s0007g03950	EnsemblPlants:VIT_08s0007g03950.t01	unigene:Vvi.12160	InterPro:Znf_CCCH
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:17969194..17974006

Molecular Weight (calculated)

44309.7 Da

IEP (calculated)

10.529

GRAVY (calculated)

-0.879

Length

384 amino acids

Sequence
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHTKP SISPTLLLSN MYQRPDMVTP GVDPQGQPLD PRKIQEHFED FYEDLFEELS KYGEIESLNI
101: CDNLADHMVG NVYVQFREEE HAANALRNLN GRFYAGRPII VDFSPVTDFR EATCRQYEEN ICNRGGYCNF MHLKKISRQL RRQLFGRNRR RRSRSRSRSP
201: YRHRGHEEHP HGPHGPHGPH GPHGPRGPRG SNRRDDDRDH RYHDRGGRRP RSRSPARRGG RSRSPGGRRN KRKAVLREGL RLSNGIGKEN RQKLLIRMII
301: ATVTMVTTTM TLNKMINSII IHSIRRRTSS SSSSMEDTTI DPIGTVWWST GSLSCDIESW LADVVCRASL QDLTFYMAKN WRSC

Best Arabidopsis Sequence Match ( AT5G42820.2 )
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV

Arabidopsis Description

U2AF35BU2AF35B [Source:UniProtKB/TrEMBL;Acc:A0A178UM74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.