Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH13511 | Soybean | nucleus | 28.05 | 60.64 |
| KRH43656 | Soybean | nucleus | 30.43 | 44.91 |
| HORVU5Hr1G103280.3 | Barley | cytosol | 26.47 | 42.31 |
| Bra018446.1-P | Field mustard | nucleus | 32.69 | 38.69 |
| PGSC0003DMT400053361 | Potato | nucleus | 33.03 | 38.37 |
| AT1G10320.1 | Thale cress | nucleus | 32.81 | 38.31 |
| GSMUA_Achr6P12770_001 | Banana | nucleus | 35.97 | 38.13 |
| Solyc01g103090.2.1 | Tomato | nucleus | 33.71 | 37.96 |
| CDY20942 | Canola | nucleus | 32.35 | 37.93 |
| TraesCS5D01G431900.1 | Wheat | nucleus | 30.88 | 36.6 |
| TraesCS5B01G425300.2 | Wheat | nucleus | 30.43 | 35.77 |
| TraesCS5A01G423300.2 | Wheat | nucleus | 30.32 | 35.5 |
| Zm00001d016836_P002 | Maize | nucleus | 30.32 | 35.31 |
| OQU85120 | Sorghum | nucleus, plastid | 30.43 | 35.07 |
| VIT_18s0122g00480.t01 | Wine grape | nucleus | 9.39 | 30.51 |
| Os02t0557500-01 | Rice | cytosol, nucleus | 11.76 | 25.3 |
| VIT_08s0007g03950.t01 | Wine grape | nucleus | 9.39 | 21.61 |
Protein Annotations
| EntrezGene:100247160 | wikigene:100247160 | MapMan:16.4.4.3 | Gene3D:3.30.70.330 | ProteinID:CCB55006 | ProteinID:CCB55006.1 |
| ncoils:Coil | UniProt:F6HK03 | EMBL:FN595990 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005681 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0030628 |
| GO:GO:0046872 | GO:GO:0089701 | InterPro:IPR000504 | InterPro:IPR000571 | InterPro:IPR012677 | EntrezGene:LOC100247160 |
| wikigene:LOC100247160 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00642 | PRINTS:PR01848 | PFscan:PS50102 | PFscan:PS50103 |
| PANTHER:PTHR12620 | PANTHER:PTHR12620:SF4 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00356 |
| SMART:SM00361 | SUPFAM:SSF54928 | InterPro:U2AF_small | UniParc:UPI0002108245 | ArrayExpress:VIT_12s0035g01790 | EnsemblPlantsGene:VIT_12s0035g01790 |
| EnsemblPlants:VIT_12s0035g01790.t01 | unigene:Vvi.14661 | RefSeq:XP_002268270 | RefSeq:XP_002268270.1 | RefSeq:XP_010657918.1 | InterPro:Znf_CCCH |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr12:+:21925971..21936166
Molecular Weight (calculated)
104479.0 Da
IEP (calculated)
6.999
GRAVY (calculated)
-1.653
Length
884 amino acids
Sequence
(BLAST)
(BLAST)
001: MENQGMSRKE KRKAAKKQKR KQTRREAAVR LREEEEAKLN DPEEQERMRL MEQEEAERCE RERRKFEESE RMWLEAAAER KRRKEVEEEE RRKILEELEK
101: KEVEKENELN EDDDWEYAEG PAEIIWQGNE IIVKKKRVRI AKKDVDQHSR KEEDTERPTS NPLPPQSEAF SDHNASIISS QQLFADVSEQ IPNFGTEQDK
201: DHCPFHIKTG ACRFGQRCSR VHFYPDKSCT LLIKNMYNGP GLAWEQDEGL EYTDEEVERC YEEFYEDVQT EFLKFGEIVN FKVCRNGSFH LRGNVYVHYK
301: SLDSAVLAYH SINGLYYAGK QVTCEFVGVT RWKVAICGEY MKSRFKTCSH GTACNFIHCF RNPGGDYEWA DWDKPPPRYW VKNMVALFGL TDESGYDKEV
401: KQESMGRRRS TSNAGTVDAD RYHSRRSRSR ESGYSHGEYA RRQFDENDAH KNVYYQRHTS DGRKRIKMHE ERYEEEAHFG DNRYSRSRIH NVESDGDLLR
501: DGTRDRERHN DHRRKSSRQR EKVLESPDDY GERKNKTYDS EGDWSDREGD KSRKHGHTRK SLKHQKEAMA VMDDLGDSNN SIHEPDSDGG WSDRDGDHDG
601: HHDHTMKRLK NRSKMSEFSN DHRNSKYRTD ATDSDGDSSH RNRQGDRYHS HRRKSSRHWD EVSETADDDE DKRKRTHDTD PTGDWSDEVG ERHQSKRRNC
701: SRHWSDDHEE TEKNVKDEFQ GQEFDTEKPD VPRVQKHSHS SRKDGSNKEM ISRADFISED KKSNGNHEAS SSDQHGRRSK SYNPDSRYHS DENIDKEGDW
801: EPEKTRKSRR EKSTSHKHHK YRDHEDYSKS KSRGGDRSIH RRHSTSLNNA DSSEEYQDSE NKDKRHGGKH QSSSHRRHSE KSNS
101: KEVEKENELN EDDDWEYAEG PAEIIWQGNE IIVKKKRVRI AKKDVDQHSR KEEDTERPTS NPLPPQSEAF SDHNASIISS QQLFADVSEQ IPNFGTEQDK
201: DHCPFHIKTG ACRFGQRCSR VHFYPDKSCT LLIKNMYNGP GLAWEQDEGL EYTDEEVERC YEEFYEDVQT EFLKFGEIVN FKVCRNGSFH LRGNVYVHYK
301: SLDSAVLAYH SINGLYYAGK QVTCEFVGVT RWKVAICGEY MKSRFKTCSH GTACNFIHCF RNPGGDYEWA DWDKPPPRYW VKNMVALFGL TDESGYDKEV
401: KQESMGRRRS TSNAGTVDAD RYHSRRSRSR ESGYSHGEYA RRQFDENDAH KNVYYQRHTS DGRKRIKMHE ERYEEEAHFG DNRYSRSRIH NVESDGDLLR
501: DGTRDRERHN DHRRKSSRQR EKVLESPDDY GERKNKTYDS EGDWSDREGD KSRKHGHTRK SLKHQKEAMA VMDDLGDSNN SIHEPDSDGG WSDRDGDHDG
601: HHDHTMKRLK NRSKMSEFSN DHRNSKYRTD ATDSDGDSSH RNRQGDRYHS HRRKSSRHWD EVSETADDDE DKRKRTHDTD PTGDWSDEVG ERHQSKRRNC
701: SRHWSDDHEE TEKNVKDEFQ GQEFDTEKPD VPRVQKHSHS SRKDGSNKEM ISRADFISED KKSNGNHEAS SSDQHGRRSK SYNPDSRYHS DENIDKEGDW
801: EPEKTRKSRR EKSTSHKHHK YRDHEDYSKS KSRGGDRSIH RRHSTSLNNA DSSEEYQDSE NKDKRHGGKH QSSSHRRHSE KSNS
001: MEQANEKEEE ERHEEAAGEK ESFEESKEKA AEMSRKEKRK AMKKLKRKQV RKEIAAKERE EAKAKLNDPA EQERLKAIEE EDARRREKEL KDFEESERAW
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHEIS DRPTSNPLPP
201: GSEASANYQN VSSAQQILES VAQEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPN KSCTLLMKNM YNGPGITWEQ DEGLEYTDEE AELCYEEFYE
301: DVHTEFLKYG ELVNFKVCRN GSFHLKGNVY VHYRSLESAI LAYQSINGRY FAGKQVNCEF VNISRWKVAI CGEYMKSRLK TCSRGSACNF IHCFRNPGGD
401: YEWADHDRPP PRFWIHKMTS LFGYSDEKHM EHESSGSLND SISDLSTDSH RQPSRRSRSR DHDHANVGST PSYRSRKYHG DTQDSTREDK LRRHAENCHD
501: GDDSPSRDGS LEREMYKERR YAKDTLHRDS RWSEHSPGHR VGRKRIHGRY SDDDSADGDD YGRRGTGHKR KPRRGTDSGV QEQMDNEKDR KTHRSSRKHS
601: REGSSADKEE GHEHDRVHTV SDKSHRERSK HRHERSSSRY SHEEDSTESR HHQHKESDKK RSVETSPVGY QSDKDRDRSK QRQRYKSDDP ESDQSRKGKR
701: QSEENSDRET HKERRHRHRK RRRTQNSDDQ NPKESEEVEE EIERWRPV
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHEIS DRPTSNPLPP
201: GSEASANYQN VSSAQQILES VAQEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPN KSCTLLMKNM YNGPGITWEQ DEGLEYTDEE AELCYEEFYE
301: DVHTEFLKYG ELVNFKVCRN GSFHLKGNVY VHYRSLESAI LAYQSINGRY FAGKQVNCEF VNISRWKVAI CGEYMKSRLK TCSRGSACNF IHCFRNPGGD
401: YEWADHDRPP PRFWIHKMTS LFGYSDEKHM EHESSGSLND SISDLSTDSH RQPSRRSRSR DHDHANVGST PSYRSRKYHG DTQDSTREDK LRRHAENCHD
501: GDDSPSRDGS LEREMYKERR YAKDTLHRDS RWSEHSPGHR VGRKRIHGRY SDDDSADGDD YGRRGTGHKR KPRRGTDSGV QEQMDNEKDR KTHRSSRKHS
601: REGSSADKEE GHEHDRVHTV SDKSHRERSK HRHERSSSRY SHEEDSTESR HHQHKESDKK RSVETSPVGY QSDKDRDRSK QRQRYKSDDP ESDQSRKGKR
701: QSEENSDRET HKERRHRHRK RRRTQNSDDQ NPKESEEVEE EIERWRPV
Arabidopsis Description
Zinc finger CCCH domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.