Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G431900.1 | Wheat | nucleus | 52.31 | 28.82 |
| TraesCS5A01G423300.2 | Wheat | nucleus | 48.18 | 26.23 |
| Zm00001d016836_P002 | Maize | nucleus | 46.96 | 25.43 |
| TraesCS5B01G425300.2 | Wheat | nucleus | 43.55 | 23.8 |
| HORVU5Hr1G103280.3 | Barley | cytosol | 31.39 | 23.33 |
| OQU85120 | Sorghum | nucleus, plastid | 35.28 | 18.9 |
| KRH13511 | Soybean | nucleus | 18.25 | 18.34 |
| KRH43656 | Soybean | nucleus | 24.33 | 16.69 |
| Bra018446.1-P | Field mustard | nucleus | 28.71 | 15.8 |
| Os09t0491756-01 | Rice | nucleus | 10.95 | 15.52 |
| CDY20942 | Canola | nucleus | 27.01 | 14.72 |
| Os05t0564200-01 | Rice | nucleus | 10.71 | 14.47 |
| GSMUA_Achr6P12770_001 | Banana | nucleus | 27.25 | 13.43 |
| PGSC0003DMT400053361 | Potato | nucleus | 24.82 | 13.4 |
| AT1G10320.1 | Thale cress | nucleus | 24.57 | 13.34 |
| Solyc01g103090.2.1 | Tomato | nucleus | 24.57 | 12.87 |
| VIT_12s0035g01790.t01 | Wine grape | nucleus | 25.3 | 11.76 |
| Os01t0667800-01 | Rice | cytosol | 5.11 | 10.14 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A0P0VKC1 | ProteinID:BAS79228.1 | GO:GO:0000398 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0030628 | GO:GO:0046872 | GO:GO:0089701 | InterPro:IPR000571 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os02g0557500 | EnsemblPlants:Os02t0557500-01 | PFAM:PF00642 | PRINTS:PR01848 | PFscan:PS50103 |
| PANTHER:PTHR12620 | PANTHER:PTHR12620:SF4 | SMART:SM00356 | InterPro:U2AF_small | UniParc:UPI000393A729 | InterPro:Znf_CCCH |
| SEG:seg | : | : | : | : | : |
Description
ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 16Zinc finger, CCCH-type domain containing protein. (Os02t0557500-01)
Coordinates
chr2:+:21113982..21115838
Molecular Weight (calculated)
47560.8 Da
IEP (calculated)
10.262
GRAVY (calculated)
-1.645
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: LDSALIAYSS MNGRYFAGKQ ITCEFVAVTR WKVAICGEYM RSRFKTCSRG IACNFIHCFR NPGGDYEWAD WDNPPPRYWI RKMAALFGPS DDSIYGKPSD
101: TPHLERSQSS DRRRPRSSDP RYTPSRTRDE DAHKQHSSRD YSHSKHERSS HTEHRRDRKE SSASDKHRHR EIKDKTSKYS SNMESERESH KYMREEKHRI
201: DHGNGGKGDH GKVRSRKNRS ERQESLEPGS SGRSSDFIDQ DTTESPSGSK STGRHHKKTR RQSLEEHSTR RSSRHRDMED DGRGQSVAVK RKDHHDTSDD
301: RWVATNSDVD SDLETQYQRS SSEGSKLGMK YHARSDSETG YGRSRSGTTK SRRERKRQSG NGERSDTLEV TSDSDTRDMS SDAWRSRSRS SDENLSTHRS
401: RRKRSRSSHD S
101: TPHLERSQSS DRRRPRSSDP RYTPSRTRDE DAHKQHSSRD YSHSKHERSS HTEHRRDRKE SSASDKHRHR EIKDKTSKYS SNMESERESH KYMREEKHRI
201: DHGNGGKGDH GKVRSRKNRS ERQESLEPGS SGRSSDFIDQ DTTESPSGSK STGRHHKKTR RQSLEEHSTR RSSRHRDMED DGRGQSVAVK RKDHHDTSDD
301: RWVATNSDVD SDLETQYQRS SSEGSKLGMK YHARSDSETG YGRSRSGTTK SRRERKRQSG NGERSDTLEV TSDSDTRDMS SDAWRSRSRS SDENLSTHRS
401: RRKRSRSSHD S
001: MEQANEKEEE ERHEEAAGEK ESFEESKEKA AEMSRKEKRK AMKKLKRKQV RKEIAAKERE EAKAKLNDPA EQERLKAIEE EDARRREKEL KDFEESERAW
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHEIS DRPTSNPLPP
201: GSEASANYQN VSSAQQILES VAQEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPN KSCTLLMKNM YNGPGITWEQ DEGLEYTDEE AELCYEEFYE
301: DVHTEFLKYG ELVNFKVCRN GSFHLKGNVY VHYRSLESAI LAYQSINGRY FAGKQVNCEF VNISRWKVAI CGEYMKSRLK TCSRGSACNF IHCFRNPGGD
401: YEWADHDRPP PRFWIHKMTS LFGYSDEKHM EHESSGSLND SISDLSTDSH RQPSRRSRSR DHDHANVGST PSYRSRKYHG DTQDSTREDK LRRHAENCHD
501: GDDSPSRDGS LEREMYKERR YAKDTLHRDS RWSEHSPGHR VGRKRIHGRY SDDDSADGDD YGRRGTGHKR KPRRGTDSGV QEQMDNEKDR KTHRSSRKHS
601: REGSSADKEE GHEHDRVHTV SDKSHRERSK HRHERSSSRY SHEEDSTESR HHQHKESDKK RSVETSPVGY QSDKDRDRSK QRQRYKSDDP ESDQSRKGKR
701: QSEENSDRET HKERRHRHRK RRRTQNSDDQ NPKESEEVEE EIERWRPV
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHEIS DRPTSNPLPP
201: GSEASANYQN VSSAQQILES VAQEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPN KSCTLLMKNM YNGPGITWEQ DEGLEYTDEE AELCYEEFYE
301: DVHTEFLKYG ELVNFKVCRN GSFHLKGNVY VHYRSLESAI LAYQSINGRY FAGKQVNCEF VNISRWKVAI CGEYMKSRLK TCSRGSACNF IHCFRNPGGD
401: YEWADHDRPP PRFWIHKMTS LFGYSDEKHM EHESSGSLND SISDLSTDSH RQPSRRSRSR DHDHANVGST PSYRSRKYHG DTQDSTREDK LRRHAENCHD
501: GDDSPSRDGS LEREMYKERR YAKDTLHRDS RWSEHSPGHR VGRKRIHGRY SDDDSADGDD YGRRGTGHKR KPRRGTDSGV QEQMDNEKDR KTHRSSRKHS
601: REGSSADKEE GHEHDRVHTV SDKSHRERSK HRHERSSSRY SHEEDSTESR HHQHKESDKK RSVETSPVGY QSDKDRDRSK QRQRYKSDDP ESDQSRKGKR
701: QSEENSDRET HKERRHRHRK RRRTQNSDDQ NPKESEEVEE EIERWRPV
Arabidopsis Description
Zinc finger CCCH domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.