CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018446.1-P	Field mustard	nucleus	68.17	68.81
CDX93437	Canola	nucleus	35.28	61.01
AT1G10320.1	Thale cress	nucleus	57.03	56.8
KRH13511	Soybean	nucleus	30.5	56.23
KRH43656	Soybean	nucleus	34.35	43.24
HORVU5Hr1G103280.3	Barley	cytosol	30.24	41.23
PGSC0003DMT400053361	Potato	nucleus	38.2	37.84
TraesCS5D01G431900.1	Wheat	nucleus	36.6	37.0
Solyc01g103090.2.1	Tomato	nucleus	38.33	36.82
TraesCS5B01G425300.2	Wheat	nucleus	36.07	36.17
TraesCS5A01G423300.2	Wheat	nucleus	35.94	35.89
Zm00001d016836_P002	Maize	nucleus	35.54	35.31
GSMUA_Achr6P12770_001	Banana	nucleus	38.73	35.01
OQU85120	Sorghum	nucleus, plastid	34.62	34.03
VIT_12s0035g01790.t01	Wine grape	nucleus	37.93	32.35
CDY46291	Canola	nucleus	5.7	30.71
CDX74383	Canola	cytosol	2.25	30.36
CDX95151	Canola	nucleus	10.88	29.18
CDY21243	Canola	cytosol	1.86	29.17
CDY52374	Canola	nucleus	11.01	29.02
CDY21244	Canola	nucleus	6.23	28.66
CDY11775	Canola	nucleus	10.74	27.93
Os02t0557500-01	Rice	cytosol, nucleus	14.72	27.01
CDX90100	Canola	nucleus	10.21	26.92
CDY60278	Canola	nucleus	8.36	25.93
CDY03934	Canola	nucleus	8.22	25.41

Protein Annotations

MapMan:16.4.4.3	Gene3D:3.30.70.330	GO:A0A078G7F0	UniProt:A0A078G7F0	EnsemblPlants:CDY20942	ProteinID:CDY20942
ProteinID:CDY20942.1	ncoils:Coil	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	GO:GO:0089701	EnsemblPlantsGene:GSBRNA2T00015087001
InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00642	PRINTS:PR01848
PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR12620	PANTHER:PTHR12620:SF4	InterPro:RBD_domain_sf	InterPro:RRM_dom
InterPro:RRM_dom_euk	SMART:SM00356	SMART:SM00361	SUPFAM:SSF54928	InterPro:U2AF_small	UniParc:UPI0004EDD7C5
InterPro:Znf_CCCH	SEG:seg	:	:	:	:

Description

BnaA08g25830DBnaA08g25830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G7F0]

Coordinates

chrLK032115:-:3709..7410

Molecular Weight (calculated)

88568.3 Da

IEP (calculated)

7.940

GRAVY (calculated)

-1.590

Length

754 amino acids

Sequence
(BLAST)

001: MEPQNEKAEE GDRLEEATGE KEFVEESKEK AAEMSRKEKR KAMKKLKRKQ VRKEIASKER EDAEAKLNDP AEQEKLKAIE EEEARKREKE LREFEESERA
101: WREAMEIKRK KEEEEERRWK ELEELRKLEA SRDGECGEDG EYEYIEEGPP EIIFKGNEII LRKNKVRVPK KSVPQVEGNE IADRPTSNPL PPGTEALPKY
201: QNVSSAQQIL DSVAQEVPNF GTEQDKAHCP FHLKTGACRF GPRCSRVHFY PDKSCTILMK NMYNGPGIAW EHDEGLEYTD EEAEHCYEEF YEDVHTEFLK
301: YGELINFKVC RNGSFHLKGN VYVHYRSLES AVLAYQSING RYFAGKQVNC EFVNISRWKV AICGEYMKSR LKTCSRGSAC NFIHCFRNPG GDYEWADFDK
401: PPPRFWIRKM TALFGYSDEY LRHMEREYSG SLRDCRSDQL TDSQRQPSRR SRSRDHDHVN VGSKPSYRSR DSSRGHRHSR HEENHHGGDG SPNSTRDGSL
501: EREIYKEPRH GKETSRHESK WSEHSPTHRV PRKRIHERYS DDDSGDDDGR GETSHKRKSS RRYPRRGSDS EVQEQLDDQE ESRTHWSSSE RRSRKEDDRE
601: GSSASQEESR AHDRVHAVGD KSQRQRSSSR YSHERDSSES RHRRHRGSYD GENDRRRSVE TSPRDKDRDK SKQRHSYNKT GDPDSSNRGR KGKQGRESQE
701: VKRNASGSSS DEEREERHKE RSHSSHRKRR RSSQHSSHEQ TPKEPDEIER WRPM

Best Arabidopsis Sequence Match ( AT1G10320.2 )
(BLAST)

001: MEQANEKEEE ERHEEAAGEK ESFEESKEKA AEMSRKEKRK AMKKLKRKQV RKEIAAKERE EAKAKLNDPA EQERLKAIEE EDARRREKEL KDFEESERAW
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHEIS DRPTSNPLPP
201: GSEASANYQN VSSAQQILES VAQEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPN KSCTLLMKNM YNGPGITWEQ DEGLEYTDEE AELCYEEFYE
301: DVHTEFLKYG ELVNFKVCRN GSFHLKGNVY VHYRSLESAI LAYQSINGRY FAGKQVNCEF VNISRWKVAI CGEYMKSRLK TCSRGSACNF IHCFRNPGGD
401: YEWADHDRPP PRFWIHKMTS LFGYSDEKHM EHESSGSLND SISDLSTDSH RQPSRRSRSR DHDHANVGST PSYRSRKYHG DTQDSTREDK LRRHAENCHD
501: GDDSPSRDGS LEREMYKERR YAKDTLHRDS RWSEHSPGHR VGRKRIHGRY SDDDSADGDD YGRRGTGHKR KPRRGTDSGV QEQMDNEKDR KTHRSSRKHS
601: REGSSADKEE GHEHDRVHTV SDKSHRERSK HRHERSSSRY SHEEDSTESR HHQHKESDKK RSVETSPVGY QSDKDRDRSK QRQRYKSDDP ESDQSRKGKR
701: QSEENSDRET HKERRHRHRK RRRTQNSDDQ NPKESEEVEE EIERWRPV

Arabidopsis Description

Zinc finger CCCH domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.