CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46291	Canola	nucleus	40.34	83.57
CDX90100	Canola	nucleus	80.0	81.12
Zm00001d041639_P001	Maize	cytosol	47.59	80.23
GSMUA_Achr11P...	Banana	cytosol	55.17	77.67
GSMUA_Achr9P12340_001	Banana	cytosol	66.55	76.28
VIT_18s0122g00480.t01	Wine grape	nucleus	71.03	75.74
KRG89181	Soybean	nucleus	67.59	73.13
Os01t0667800-01	Rice	cytosol	51.72	72.46
CDX95151	Canola	nucleus	69.66	71.89
KRH49506	Soybean	nucleus	66.9	71.59
CDX74383	Canola	cytosol	13.79	71.43
CDY52374	Canola	nucleus	69.66	70.63
CDY03934	Canola	nucleus	58.97	70.08
CDY60278	Canola	nucleus	57.59	68.72
TraesCS3A01G246800.1	Wheat	nucleus	65.52	68.1
TraesCS1A01G397300.1	Wheat	nucleus	63.45	67.65
TraesCS3D01G244700.1	Wheat	nucleus	64.83	67.38
HORVU3Hr1G061060.2	Barley	nucleus	64.83	66.9
TraesCS3B01G272500.1	Wheat	nucleus	64.83	66.9
KXG35922	Sorghum	nucleus	65.17	66.08
Zm00001d020954_P001	Maize	nucleus	65.17	65.85
CDY21244	Canola	nucleus	36.9	65.24
OQU87301	Sorghum	nucleus	64.14	64.58
Zm00001d007784_P001	Maize	plastid	66.21	64.21
Zm00001d009570_P001	Maize	nucleus, plastid	65.86	62.83
TraesCS1D01G405300.3	Wheat	nucleus	63.45	62.8
Os09t0491756-01	Rice	nucleus	62.76	62.76
EES18681	Sorghum	nucleus	66.21	62.54
Os05t0564200-01	Rice	nucleus	65.52	62.5
Zm00001d039014_P001	Maize	extracellular, plasma membrane, plastid	65.86	62.22
CDY21243	Canola	cytosol	10.0	60.42
TraesCS5D01G275300.1	Wheat	nucleus	62.07	57.69
HORVU1Hr1G087660.2	Barley	nucleus	63.45	56.62
TraesCS5A01G267500.1	Wheat	nucleus	61.38	56.51
HORVU5Hr1G073680.1	Barley	nucleus	61.03	56.37
TraesCS1B01G425600.2	Wheat	nucleus	63.45	56.27
CDX93437	Canola	nucleus	18.62	12.39
CDY20942	Canola	nucleus	27.93	10.74

Protein Annotations

MapMan:16.4.1.2.11.1	Gene3D:3.30.70.330	GO:A0A078FBK3	UniProt:A0A078FBK3	EnsemblPlants:CDY11775	ProteinID:CDY11775
ProteinID:CDY11775.1	ncoils:Coil	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	GO:GO:0089701	EnsemblPlantsGene:GSBRNA2T00050008001
InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00642
PRINTS:PR01848	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR12620	PANTHER:PTHR12620:SF27	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00356	SMART:SM00361	SUPFAM:SSF54928	InterPro:U2AF_small
UniParc:UPI0004EDBA0D	InterPro:Znf_CCCH	SEG:seg	:	:	:

Description

BnaC03g58030DBnaC03g58030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FBK3]

Coordinates

chrLK032014:-:299817..301128

Molecular Weight (calculated)

33986.7 Da

IEP (calculated)

9.005

GRAVY (calculated)

-1.269

Length

290 amino acids

Sequence
(BLAST)

001: MAEHLASIYG TEKDRVNCPF YNKMGACRHG DRCSRIHNRP AISPTLLLAN MYQRPDMITP GVDAQGQPLD PRKIQEHFED FFEDLFEELG KFGEIESLNI
101: CDNLADHMIG NVYVQFKEED QAAAALRALQ GRSYLGRPII GEYSPVTDFR EATCRQYEEE NCSRGGYCNF MHVKLVSREM RRKLFGRRSY RRGSRSRSIS
201: PRGRREYGRR GGDRDPPRRE FNHRDRDGEF YRHGSGKRSE RGGRDRDRDR DRDGSRRRER SPGGGREGSE ERRARIELWN REREEKEEEA

Best Arabidopsis Sequence Match ( AT1G27650.1 )
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDAQGQPLD PRKIQEHFED FFEDLFEELG KFGEIESLNI
101: CDNLADHMIG NVYVQFKEED QAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN NCNRGGYCNF MHVKLVSREL RRKLFGRYRR SYRRGSRSRS
201: RSRSISPRNK RDNDRRDPSH REFSHRDRDR EFYRHGSGKR SSERSERQER DGSRGRRQAS PKRGGSPGGG REGSEERRAR IEQWNREREE KEEGGA

Arabidopsis Description

U2AF35ASplicing factor U2af small subunit A [Source:UniProtKB/Swiss-Prot;Acc:Q9S709]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.