Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P11020_001 | |
| GSMUA_Achr4P16510_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42820.1 | GSMUA_Achr4P11020_001 | AT4G36690.1 | 21798944 |
| AT5G42820.1 | GSMUA_Achr4P16510_001 | AT4G36690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d041639_P001 | Maize | cytosol | 59.68 | 87.79 |
| GSMUA_Achr11P... | Banana | cytosol | 70.36 | 86.41 |
| Os01t0667800-01 | Rice | cytosol | 65.22 | 79.71 |
| VIT_18s0122g00480.t01 | Wine grape | nucleus | 83.0 | 77.21 |
| GSMUA_Achr11P... | Banana | nucleus | 68.77 | 74.68 |
| TraesCS1A01G397300.1 | Wheat | nucleus | 80.24 | 74.63 |
| KRG89181 | Soybean | nucleus | 77.87 | 73.51 |
| KRH49506 | Soybean | nucleus | 77.47 | 72.32 |
| OQU87301 | Sorghum | nucleus | 80.63 | 70.83 |
| TraesCS3B01G272500.1 | Wheat | nucleus | 78.66 | 70.82 |
| AT5G42820.1 | Thale cress | nucleus | 79.05 | 70.67 |
| CDX95151 | Canola | nucleus | 78.26 | 70.46 |
| TraesCS3A01G246800.1 | Wheat | nucleus | 77.47 | 70.25 |
| TraesCS3D01G244700.1 | Wheat | nucleus | 77.08 | 69.89 |
| Zm00001d007784_P001 | Maize | plastid | 82.21 | 69.57 |
| HORVU3Hr1G061060.2 | Barley | nucleus | 77.08 | 69.39 |
| TraesCS1D01G405300.3 | Wheat | nucleus | 80.24 | 69.28 |
| CDY52374 | Canola | nucleus | 78.26 | 69.23 |
| AT1G27650.1 | Thale cress | nucleus | 80.63 | 68.92 |
| Bra010926.1-P | Field mustard | nucleus | 77.47 | 68.53 |
| KXG35922 | Sorghum | nucleus | 77.47 | 68.53 |
| Bra027459.1-P | Field mustard | nucleus | 78.66 | 68.38 |
| Zm00001d009570_P001 | Maize | nucleus, plastid | 81.82 | 68.09 |
| Zm00001d039014_P001 | Maize | extracellular, plasma membrane, plastid | 82.61 | 68.08 |
| EES18681 | Sorghum | nucleus | 82.61 | 68.08 |
| Zm00001d020954_P001 | Maize | nucleus | 77.08 | 67.94 |
| Os05t0564200-01 | Rice | nucleus | 81.42 | 67.76 |
| CDY11775 | Canola | nucleus | 76.28 | 66.55 |
| CDX90100 | Canola | nucleus | 75.1 | 66.43 |
| Os09t0491756-01 | Rice | nucleus | 75.49 | 65.86 |
| CDY60278 | Canola | nucleus | 63.24 | 65.84 |
| CDY03934 | Canola | nucleus | 62.06 | 64.34 |
| HORVU1Hr1G087660.2 | Barley | nucleus | 80.24 | 62.46 |
| TraesCS1B01G425600.2 | Wheat | nucleus | 80.24 | 62.08 |
| Bra030057.1-P | Field mustard | nucleus | 62.45 | 61.72 |
| CDY46291 | Canola | nucleus | 33.99 | 61.43 |
| TraesCS5D01G275300.1 | Wheat | nucleus | 73.12 | 59.29 |
| HORVU5Hr1G073680.1 | Barley | nucleus | 72.73 | 58.6 |
| TraesCS5A01G267500.1 | Wheat | nucleus | 72.33 | 58.1 |
| CDY21244 | Canola | nucleus | 37.15 | 57.32 |
| GSMUA_Achr11P... | Banana | extracellular | 13.04 | 30.0 |
| GSMUA_Achr6P12770_001 | Banana | nucleus | 31.62 | 9.59 |
Protein Annotations
| MapMan:16.4.1.2.11.1 | Gene3D:3.30.70.330 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0046872 | GO:GO:0089701 | EnsemblPlantsGene:GSMUA_Achr9G12340_001 |
| EnsemblPlants:GSMUA_Achr9P12340_001 | EnsemblPlants:GSMUA_Achr9T12340_001 | InterPro:IPR000504 | InterPro:IPR000571 | InterPro:IPR012677 | UniProt:M0TZP3 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00642 | PRINTS:PR01848 | PFscan:PS50102 | PFscan:PS50103 |
| PANTHER:PTHR12620 | PANTHER:PTHR12620:SF27 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00356 |
| SMART:SM00360 | SMART:SM00361 | SUPFAM:SSF54928 | InterPro:U2AF_small | UniParc:UPI0002966997 | InterPro:Znf_CCCH |
| SEG:seg | : | : | : | : | : |
Description
Splicing factor U2af small subunit B [Source:GMGC_GENE;Acc:GSMUA_Achr9G12340_001]
Coordinates
chr9:-:8054356..8055411
Molecular Weight (calculated)
29725.9 Da
IEP (calculated)
8.836
GRAVY (calculated)
-1.049
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDAQGQPIE PQKIQEHFED FYEDIFEELG KFGEIESLNV
101: CDNLADHMIG NVYVQFREEE QAAAAMRALQ GRFYSGRPII VDFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQIGREL RRKLFGRYRR SSIRRNYRDG
201: GRRSGDRHGN YERDGGRRWH GNPRRTKSPI REGSEERRAK IEQWNREREE KHG
101: CDNLADHMIG NVYVQFREEE QAAAAMRALQ GRFYSGRPII VDFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQIGREL RRKLFGRYRR SSIRRNYRDG
201: GRRSGDRHGN YERDGGRRWH GNPRRTKSPI REGSEERRAK IEQWNREREE KHG
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
Arabidopsis Description
U2AF35BU2AF35B [Source:UniProtKB/TrEMBL;Acc:A0A178UM74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.