Factsheet for GSMUA_Achr11P14600_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
extracellular 5
plastid 1
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	33.64	15.88
GSMUA_Achr11P...	Banana	cytosol	29.09	15.53
GSMUA_Achr9P12340_001	Banana	cytosol	30.0	13.04
GSMUA_Achr6P12770_001	Banana	nucleus	20.91	2.76
CDX93437	Canola	nucleus	9.09	2.29
Bra019944.1-P	Field mustard	nucleus	9.09	1.95

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0089701
EnsemblPlantsGene:GSMUA_Achr11G14600_001	EnsemblPlants:GSMUA_Achr11P14600_001	EnsemblPlants:GSMUA_Achr11T14600_001	InterPro:IPR012677	UniProt:M0RS90	InterPro:Nucleotide-bd_a/b_plait_sf
PRINTS:PR01848	PANTHER:PTHR12620	PANTHER:PTHR12620:SF17	InterPro:RBD_domain_sf	SUPFAM:SSF54928	TMHMM:TMhelix
InterPro:U2AF_small	UniParc:UPI0002962727	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr11G14600_001]

Coordinates

chr11:-:15926622..15927167

Molecular Weight (calculated)

12623.4 Da

IEP (calculated)

7.300

GRAVY (calculated)

0.492

Length

110 amino acids

Sequence
(BLAST)

001: MFVTIWLINL VGNVYVKFRD EDDAANILVN LKGRYYDGGL IFMCFISCLM HFVSSTCRQH KDNACNQGGF CNFIHFKQIS WYLLYLSSTT FCSDNSLVSF
101: LIIMVLFSGS

Best Arabidopsis Sequence Match ( AT5G42820.2 )
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV

Arabidopsis Description

U2AF35BU2AF35B [Source:UniProtKB/TrEMBL;Acc:A0A178UM74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.