Factsheet for GSMUA_Achr11P26080_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400092352	Potato	cytosol	43.78	73.91
GSMUA_Achr11P...	Banana	cytosol	63.95	72.33
GSMUA_Achr9P12340_001	Banana	cytosol	74.68	68.77
KRH67839	Soybean	endoplasmic reticulum, nucleus	75.54	56.05
KRG96125	Soybean	nucleus	75.11	55.73
Solyc10g083640.1.1	Tomato	nucleus	80.69	53.71
VIT_08s0007g03950.t01	Wine grape	nucleus	80.69	48.96
PGSC0003DMT400072640	Potato	nucleus	49.79	42.49
GSMUA_Achr11P...	Banana	extracellular	15.88	33.64
GSMUA_Achr6P12770_001	Banana	nucleus	30.47	8.51

Protein Annotations

MapMan:16.4.1.2.11.1	Gene3D:3.30.70.330	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	GO:GO:0089701	EnsemblPlantsGene:GSMUA_Achr11G26080_001
EnsemblPlants:GSMUA_Achr11P26080_001	EnsemblPlants:GSMUA_Achr11T26080_001	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	UniProt:M0RVI8
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00642	PRINTS:PR01848	PFscan:PS50102	PFscan:PS50103
PANTHER:PTHR12620	PANTHER:PTHR12620:SF17	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00356
SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928	InterPro:U2AF_small	UniParc:UPI000296E312	InterPro:Znf_CCCH
SEG:seg	:	:	:	:	:

Description

Splicing factor U2af small subunit A [Source:GMGC_GENE;Acc:GSMUA_Achr11G26080_001]

Coordinates

chr11:+:24980062..24983970

Molecular Weight (calculated)

27626.5 Da

IEP (calculated)

8.890

GRAVY (calculated)

-1.029

Length

233 amino acids

Sequence
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHTKP SISPTLLLSN MYQRLDNAIT PGLDSQGQPM DPRQIQEHFE NFYEDLFEEL SKYGEIESLN
101: VCDNLADHMV GNVYVQFREE EHAANALRNL TGRFYAGRPI IVDFSPVTDF REATCRQYEE NTCNRGGYCN FMHLKQISRE LRRKLFGRYR RRQRSRSRSR
201: SPYRQRNFED RHVNRSHGKR HEEPQQEPCR KKE

Best Arabidopsis Sequence Match ( AT5G42820.2 )
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV

Arabidopsis Description

U2AF35BU2AF35B [Source:UniProtKB/TrEMBL;Acc:A0A178UM74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.